Gene Pcal_0478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0478 
Symbol 
ID4909506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp458645 
End bp459760 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content63% 
IMG OID640124228 
Productglycosyl transferase family protein 
Protein accessionYP_001055375 
Protein GI126459097 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACTGCG TAACCCTCGT AATACCCACC CTAGACGAGG CCGAGGCCAT AGGCAAAGTG 
ATAGAGGAGG CCAGGAGAGC GGGCTTCACA AAGATACTAG TGGTAGACGG AGGCTCCAGG
GACGGCACCC CCCAAATCGC CGCAGAGAAG GGCGCAGTCG TAATAGGGCA GAGGGGGAGG
GGAAAGGGAG ACGCCATAGC CACAGCACTA GACTACGTGG ACACCCCCTA CCTCGTCGTA
ATAGACGGAG ACTACACCTA CCCCCCAGAG GAGGCCGCCA AGCTAGTCGC ATACCTACGG
CACTACGACC TAGTCCTAGG CGCGAGGCAG GGCCCCATGC CCCTCATCTA CCGCGTGGGA
AACTGGCTAC TGGCAAGGGC CATATCCCTA ATGTACGGAG TGAGGCTGAG GGACCCCCTC
ACAGGCATGT ACGCCGCCAG GACCGAGGTC CTCAGGCGAG CCGCCCCCAC AGCCCAAGGC
TTCGACATAG AGACAGAGAT AATAGCCAAG GCAGTGGAAC AGGGCGCGTC GGTGAGAGAG
GTGCCCATCC AGTACAGGAA GAGGCTAGGC CGCAAAAAGC TAAAGCCATG GCACGGCCTT
CACATCCTCT GGCGCGCAGT GAGAGCCGCC TACACCGCCA ACCCACTCCT CGCCCTATAC
CTCGCCGGAG CCCTCCTCGC CGCGCCAGGC CTCGCCCTAG GCGGATGGGT CGCCTACAGG
CTATTCTACC AGGGAGTCCC CCACTACATG CTAGGCTTGT TAGCCCTCGG CCTACTCCTA
CTCGGGTTGG TCTCCCTCGC CCTAGCCCCC CTAGCCGCCG CCGTGGTGAG ACTGAGGGCA
CAAATCGCCC GCGCCACCCC CAGACAGGAG CCCACAGACT GCCTCCCACC ACTCCCACCA
CCCCCACCAC CCCAGCCCAG GAGGCGCCCA ACCATCTGGG ACAGACTAGA GGCAACGGCC
AGGGGGCTGA CAATAGCCTT CGCCGCGACC CTCTCCGCCG CCGCGTACTT CCTAGCCGTG
GGAGACACGC CGACCGCGAA CAAGCTCGCC GAATACGCCT ACTACTTCCT CGCCGCCGCG
ACTGTGATAT ATCTGGCAGT AGCCGCCAAA CAATGA
 
Protein sequence
MDCVTLVIPT LDEAEAIGKV IEEARRAGFT KILVVDGGSR DGTPQIAAEK GAVVIGQRGR 
GKGDAIATAL DYVDTPYLVV IDGDYTYPPE EAAKLVAYLR HYDLVLGARQ GPMPLIYRVG
NWLLARAISL MYGVRLRDPL TGMYAARTEV LRRAAPTAQG FDIETEIIAK AVEQGASVRE
VPIQYRKRLG RKKLKPWHGL HILWRAVRAA YTANPLLALY LAGALLAAPG LALGGWVAYR
LFYQGVPHYM LGLLALGLLL LGLVSLALAP LAAAVVRLRA QIARATPRQE PTDCLPPLPP
PPPPQPRRRP TIWDRLEATA RGLTIAFAAT LSAAAYFLAV GDTPTANKLA EYAYYFLAAA
TVIYLAVAAK Q