| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0450 |
|---|
| Symbol | |
|---|
| ID | 4910074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 432431 |
|---|
| End bp | 433435 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640124202 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_001055349 |
|---|
| Protein GI | 126459071 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGT ATAAGATCGT TGTTTTATCT CCAGCGCCTG AGGCTTTGCT TAAAATGTGG
GCAACCCCCA TTGCCCAGAA GTACGGCATC GCCATCGACG AGGTGGAAGT TGTGACATTT
TTTGAGCCAA ATTACGAGGA GATTGGGCGA CATGTGGCAG ATGCAGACGT CGTGGTGGGG
GACTACACCT TTAGAATTAA GATAGATGCC TCGCTCTGTG AGAAGATGTC TAAGGTTAGG
CTTATTCAAC AGCCAAGCAC CGGCTACGAC CACATCGACG TAGAGGCTTG CGCGAGGCGG
GGCATCCCCG TGGCCAACAT AGGTGGGGCT AACGCCATTT CTGTGGCTGA GCACACAATA
ATGCTGGCTC TCATGTTGTT AAAACGCGCC GTGTATGCCC ATAGGAGGCT TTTAGAAGGC
CAGTGGACGC AAGGGGAGCT CATGAACGTT ATCGGCGAAG TGTTTGGAAA AACGTGGGGC
GTGTTGGGCA TGGGGAGGAT TGGCCGCGAG GTGGCGGTCA GAGCTATGGC GCTAGGCGCC
AAGGTAATAT ACTACGACGT GGTGAGAAAC GAAGAGATGG AGAAGAGGGG CGCAGAATAT
AGGCCTTTTA ACAGGCTATT GGCCGAGAGC GACATCCTCA GCATCCATGT GCCTCTGACC
CCAGCTACTA GGAAGATGAT CGGCGAGAGG GAGCTAAGGC TTATGAAGCC CACCGCCGTG
GTTATAAATG TTTCAAGAGG CGAGATAGTG GACGAGGAGG CTCTCGCCAA GGCAGTTAGA
GAGGGCTGGA TTGCGGGGGC TGGAGTAGAC GTGTTTTCAG TGGAGCCGCC TCCGCCTGAT
CACCCGCTTA TTCAAGCCGC CAGAGAGGGG TACAACGTCG TAGTGACGCC GCACATCGCC
GGCGCCACAA ACGAGGCTAG AATGCGCATA ATAAACGTGA GCCTTGAAAA CGTGTTTAAA
GTGCTCGCCG GCCTTAAGCC TGACAACGTT GTTAATATGC CATGA
|
|---|
| Protein sequence | MAKYKIVVLS PAPEALLKMW ATPIAQKYGI AIDEVEVVTF FEPNYEEIGR HVADADVVVG
DYTFRIKIDA SLCEKMSKVR LIQQPSTGYD HIDVEACARR GIPVANIGGA NAISVAEHTI
MLALMLLKRA VYAHRRLLEG QWTQGELMNV IGEVFGKTWG VLGMGRIGRE VAVRAMALGA
KVIYYDVVRN EEMEKRGAEY RPFNRLLAES DILSIHVPLT PATRKMIGER ELRLMKPTAV
VINVSRGEIV DEEALAKAVR EGWIAGAGVD VFSVEPPPPD HPLIQAAREG YNVVVTPHIA
GATNEARMRI INVSLENVFK VLAGLKPDNV VNMP
|
|---|
| |