| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0446 |
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| Symbol | |
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| ID | 4909083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 427998 |
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| End bp | 429353 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640124197 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001055345 |
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| Protein GI | 126459067 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTTAT ATACCCGGTC ATGGGCCTCT ATGGCGTCAA AAGCCTACAT CTGGGTAGCA
ATCGCGGTGG TAATTATAGC CGTAATAGCC GCAGTGCTCC TAATGCAACA GCCTACTACA
CCAGCGCCCT CCCCCACGAC GGCCCCAGCA ACAAAAACCA CCGCCACGCC CACAGCGACT
ACGCCTGCAC AGCAGGTAAA AGTTGTCAAA ATAGGCGCGT TGACGCCTTT GACTGGGGGG
CTGCAGTCTT ATGGCATTGG CATGAAGAAT GCGGTGGAGC TGGCTGTAGA GGATGCTAAT
CAGATGTGCG CTGGTAAGGG CATTAAGTTT GAACTATTGG TAGAGGACAC GGCGACTGAC
CCCAACCAGG CTTTGCAGAA GTTGCAGGTG TTGTACGGCA AGGGGGCTAG GCTAATCGCT
GGCCCAATGT CTAGTAGAGA GGTAAGCGCG GTGAAGTCTT TCGCCGACCA AAACCACATA
ATCGTGGTTA GCCCATCCTC AACTTCCCCA CTACTGGCGG TGGCCGACTG GGTGTTTAGA
ATGGTCCCCA CCGACTTTGC CCAGGCCAAG GCCATAGCCG ACTTGATGCA GAAGCTGGGC
ATTAAGAGGG CGGCCATTAT CTATAGAAAC GACGCGTGGG GCGTCGGGCT TAAAGACGCC
ATTGTCTCAG AGGCGCAGAA GTTGGGCATA CAGATCGTCG CTGTAAAGGG CTATGACCCA
GATCCCAAGG CTTTTCCACA GGCAATGCCC ACAGTGGTGA ACGAGGTGTC TAAGGCCATT
GGCCAGCCTT CGCCAGACGC CGCGGTGGTC TTCCTCACTT TTGAAGACGA CGGTGTGGCC
GCCATGTCTG CCGCCGGCGG TGACCCCGTG TTGAGCAAAG TGAGGTGGAT TGGGACCGAC
GGCTTTGCCT ACAGCGAGGC TTTGATAAAG CAGGTGGGCC AGTACATGGC CGCCGCTAAG
TTGCTTGGCA CTATCGCCGC GCCGGACCCC AACGACCCCA ACTACCAAGC CTTTAAACAG
AAGTACAAGG CTAAGTACGG GAGAGACCCC GTGGCCTACG ACCCCTACAG CTACGACGCC
GCCATGATGC TCATGAAGAT CGTATGCGAG CTCGGCACAG ACGACCCAGA CAAGGTGAAG
GCCACACTAG AGCAGTGGGC CAAAGAGGGC AAGTACTCGG GAGTGACCGG GAAGGTGTAC
TTAGACGAAT ACGGCGACAG GGCCTACCCC AACTACCTCA TATGGGGCGT AGTCGTTGAA
GGCGGACAGC CAAAGTACAT AGACGCGGGG TACTACTACG GCACAGATAG AAAGATCGTG
GTCTACGACC AGGGCAAGCC CCTCTTCCAG CAGTAG
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| Protein sequence | MLLYTRSWAS MASKAYIWVA IAVVIIAVIA AVLLMQQPTT PAPSPTTAPA TKTTATPTAT
TPAQQVKVVK IGALTPLTGG LQSYGIGMKN AVELAVEDAN QMCAGKGIKF ELLVEDTATD
PNQALQKLQV LYGKGARLIA GPMSSREVSA VKSFADQNHI IVVSPSSTSP LLAVADWVFR
MVPTDFAQAK AIADLMQKLG IKRAAIIYRN DAWGVGLKDA IVSEAQKLGI QIVAVKGYDP
DPKAFPQAMP TVVNEVSKAI GQPSPDAAVV FLTFEDDGVA AMSAAGGDPV LSKVRWIGTD
GFAYSEALIK QVGQYMAAAK LLGTIAAPDP NDPNYQAFKQ KYKAKYGRDP VAYDPYSYDA
AMMLMKIVCE LGTDDPDKVK ATLEQWAKEG KYSGVTGKVY LDEYGDRAYP NYLIWGVVVE
GGQPKYIDAG YYYGTDRKIV VYDQGKPLFQ Q
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