Gene Pcal_0378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0378 
Symbol 
ID4908568 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp363314 
End bp364336 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content62% 
IMG OID640124130 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionYP_001055279 
Protein GI126459001 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR00978] aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCGCC TCAAGGTATA TATCATAGGC GCCACAGGGC TCGTGGGCCA ACGCTACGTC 
CAACTGCTGG CGGACCACCC CTGGTTCGAG GTAGTGGGCC TCGCGGCCTC TGAGAAAAGC 
GCCGGCAAGA GACTGGCGGA GGCTGGGTGG GTGCTGGACG AGGCGCCGCC CCCCTCCCTC 
GCCGATATGA AGATTGAAAA GCTGGACGTG GACAAGGTGC CCAAGGTGGA CTTCGTCTTC 
TCGGCGCTTC CCAGCGAGGT GGCGGCGAAG GTGGAGCCCG CCCTCGCCGC GCGGGGCCAC 
GTGGTGCTCT CCAACTCGAG CAACATGAGA ATGGACCCAG ACGTCCCCCT AATAGTGCCT 
GAGATAAACC CAGAGGACCT CAAGCTCGTG GAAGAGCAGA GGAGGACGCG GGGGTGGAGC 
GGGGCAGTGG TGAAGAAGCC CAACTGCACC ACCACAATAC TCAACCTCCC GCTCAAGCCC 
ATTTTAGACG AGTGGGGGAT AAGAGCCGTC CACGTGGTGA CTATGCAAGC CCTCTCCGGC 
GCGGGGTACG CCGGCGTTCC CTCTGTGGCC ATCTTGGACA ACCTCATACC CCACATAAGA 
GGCGAAGAGG AAAAGGTGGT GGCAGAGACG CGGAAGATCT TAAAGAGGGA CTTTGAGATC 
TACGCCACCA CGACCCGCGT CCCAGTATTG GACGGCCACA CAGAAGTCGT CTACGTTGAC 
ACCGAGAGGG ACTTCGACGA GACCGCGGTG GCCGAGGCGT TGGCCAAGTT CAAGGGACTT 
CCCCAGGAGC TCGGCTTGCC CACAGCCCCC CAGAGGCCTA TAGTGGTCAG GAGCCAGGCC 
GACAGGCCCC AGCCCAGGCT GGACAGGTGG GAGGGACGTG GGATGTCCGT GGTGGTGGGG 
AGAGTGAGGA GACTTGCCCC CAGGAAGCTG GCCTTCGTAG TCCTAGGCCA CAACACTGTG 
AGAGGCGCCG CAGGCAACTC GGTTCTGACT GCCGAGCTTA TGGCGAAGCT GGGGGTTAGA 
TGA
 
Protein sequence
MDRLKVYIIG ATGLVGQRYV QLLADHPWFE VVGLAASEKS AGKRLAEAGW VLDEAPPPSL 
ADMKIEKLDV DKVPKVDFVF SALPSEVAAK VEPALAARGH VVLSNSSNMR MDPDVPLIVP 
EINPEDLKLV EEQRRTRGWS GAVVKKPNCT TTILNLPLKP ILDEWGIRAV HVVTMQALSG 
AGYAGVPSVA ILDNLIPHIR GEEEKVVAET RKILKRDFEI YATTTRVPVL DGHTEVVYVD 
TERDFDETAV AEALAKFKGL PQELGLPTAP QRPIVVRSQA DRPQPRLDRW EGRGMSVVVG 
RVRRLAPRKL AFVVLGHNTV RGAAGNSVLT AELMAKLGVR