| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0356 |
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| Symbol | |
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| ID | 4908625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 340834 |
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| End bp | 342936 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640124108 |
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| Product | SMC domain-containing protein |
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| Protein accession | YP_001055257 |
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| Protein GI | 126458979 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR03185] DNA sulfur modification protein DndD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAGA GGCTTGAGGT AGTAAACTTC AAGGCCCACG CGAGGGCCGT CTTTAAGTTC
GGCGAGGGGG TAAACTTCGT CTATGGGCCC AACGGCTCTG GGAAGACGTC CCTCATGGAG
GCCGTGGCGG TGGCGCTCTT CGGCTCCCAG TGGGTGAGGA AGGTGGGCGG GAAGTGGGCA
GACTTCTTGC GGAGAGGCTC TCCGCACGGC GAGGTGAAGC TGACGCTTGT AGTAGGGGGG
CGGGAGGTGG TGGTGGAGAG GAGGTTCGGC GAGTCCGGCG GCTTGGGGGC CTACCTCTCC
GTCGACGGCT CCGTGGAGGC GAGGGGGGAC ACAGAGGTCA CAGACTACGT CAAATCCAGG
CTCGGCCTCA GCGTAGACGA GTTTAGAAAT CTGTTGTACA TACGGCAGGG GGAGCTCAGG
AGGATTTTAC AAGAGCCCGA GTACATCGAC AGGGTGTTGA AGCTGGACGA GTTTGACAAA
GTGGACGAGG TGGTTAAGGA CATCTTCAAC GAGTTTAGGG CCAGGAGGGA GAGGGTCGGC
GGCAGGGCGG AGGAGCTGGA GAGGAGGGTG AAAGACGCCG AGAGGCGGAT AGAGGAGCTT
AAGGCCCGCC TCGCGGAGGC TGAGGCTAGG GTAAAGGAGC TGGAGCCCCT CGCCGCGAGG
TTTAGAGATG CCGAGAGGAG GTACTTCGAG GCCAGGGAGA GGGCGGCGGC GTTGGCCAAG
GAGAGGGAGG CCTTGGAGAA GAGGCTCGCC GACTTGGCCC GCGCCGTGGC TGAGGTGGAG
CGGGACTTAG AAGAGGTGGA GAGGGGGCTT GCGGAGGTGG AGCAAGCAAA GGCTGAGTTG
GCGTCTCTGC CGCAGGTGGG TGACGTGGAG AAGGAGTACT ACGAGCTGAG GCAGGCTGTG
GCCGTGGCCG AGAAAGTGCC AGAGGAGGTG AGGACGTACG ACCCCCGCGT CTTGGAGGAG
CTGAGGCGGA GGTACGAGGA GTTGACGAAG AGGCAGGCGG AGCTCAAGTC TAGGCTTGAA
CTTCTGCGAG ACGCCCTGAG GCTGGCACAG AGGGCCGAGG GGGGTAGGTG CCCCGTGTGC
GGCTCGCCTC TCACTAGGGA GGCCGTCCAG CGGCACGAGC TAGAGGTGGC GGGGCTCGAG
GCCGAGGTGC AGAGGCTGGC CAAGGCCCTT GAGCAAGTGA GAACAGAGAT GAAGAGGGCC
GAGGAGCTGG AGAAGGCGTA CCACTTGTAC AAGCCGTACC TATCCCTCGA CCTCCGGGAG
GCCAGAAGGA GGCTGGGGGA GCTAGAGGCG CAGTACCGGC TAAAGAGGGA GGTGGAGGCT
AGGCGTAGCT ACCTCGCCGC CGTGATGGCC AAGGAGGAGG CGCTCGTAAA AAGGCTCGAG
GAACTGAGGC GGAGGAGAGA GGAGCTGGGG CGGGAGGCCG TGGAGGCGAG CGCGAGGCTG
GCCGAGGTAG AGGAGGCCTT GCCCAAGGCC GCCGCCGAGG CGGAGGAGGC AGAGAAGGCG
TACAGAGAGC TGAGAGCCGC ATACGTGGAG TACCTCAAGG CGCATTCAAG GGCAGAGGAG
CTGAGGAGGG AGCTGGAAAA GGCCGAGAGA GAGCTCGCAG GCGCCGCGGC TGAGTTAGAA
AAGGCGAGGG CAGAGCTGGA GAAGTTGGAC AAGGCCCTCG CCGCGGCCAA GAACATAAGG
GCGGTCCTGG GGGAGGTGAA GCCCCTTGCC AGGCAGATAC TTCTCAAGGC CATAAACGAG
GAGCTCAACG CAGTGTTCCT AAGGCTTAGG CACAAGGAGG CCTTTAAGTC TGTCCAACTG
GTCGAGGCGG GGGGCCGCTA CGCCGTGCGT ATACATACGC CTAACGGGCA CATAGAGCAC
TCCCTCCTCT CCCTCGGCGA GCAGAACCTG CTGGCCCTAT CGCTGAGGGT GGCCCTCGCC
AGGGCGTTGA TAGGCACGGC GCCCTTCATG ATGCTCGACG AGCCCACGGA GCACCTCGAC
GAAGAGCACA GGAGGAGAAT CGTGGAACTC GTCAGAGACC TAACATCAGT CGTGCCGACC
GTGATAGTTA CCTCGCACTT AGGGGAGTTC GAGGAGGTCG CCGACGTGGT GATACAGCTC
TAG
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| Protein sequence | MIKRLEVVNF KAHARAVFKF GEGVNFVYGP NGSGKTSLME AVAVALFGSQ WVRKVGGKWA
DFLRRGSPHG EVKLTLVVGG REVVVERRFG ESGGLGAYLS VDGSVEARGD TEVTDYVKSR
LGLSVDEFRN LLYIRQGELR RILQEPEYID RVLKLDEFDK VDEVVKDIFN EFRARRERVG
GRAEELERRV KDAERRIEEL KARLAEAEAR VKELEPLAAR FRDAERRYFE ARERAAALAK
EREALEKRLA DLARAVAEVE RDLEEVERGL AEVEQAKAEL ASLPQVGDVE KEYYELRQAV
AVAEKVPEEV RTYDPRVLEE LRRRYEELTK RQAELKSRLE LLRDALRLAQ RAEGGRCPVC
GSPLTREAVQ RHELEVAGLE AEVQRLAKAL EQVRTEMKRA EELEKAYHLY KPYLSLDLRE
ARRRLGELEA QYRLKREVEA RRSYLAAVMA KEEALVKRLE ELRRRREELG REAVEASARL
AEVEEALPKA AAEAEEAEKA YRELRAAYVE YLKAHSRAEE LRRELEKAER ELAGAAAELE
KARAELEKLD KALAAAKNIR AVLGEVKPLA RQILLKAINE ELNAVFLRLR HKEAFKSVQL
VEAGGRYAVR IHTPNGHIEH SLLSLGEQNL LALSLRVALA RALIGTAPFM MLDEPTEHLD
EEHRRRIVEL VRDLTSVVPT VIVTSHLGEF EEVADVVIQL
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