Gene Pcal_0297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0297 
Symbol 
ID4909106 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp289013 
End bp290104 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content61% 
IMG OID640124048 
Productradical SAM domain-containing protein 
Protein accessionYP_001055199 
Protein GI126458921 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1180] Pyruvate-formate lyase-activating enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGTTTTT GCAAACTCTG TGGAAGAGTT GGTATCACAA TTTCTAGCAG GCTGGGGGTC 
TGTGTAGACT GCCTTAGGAG GAGGCCGAGG GAGGCGTTGA AGATCGCCGA AGAGCTCCAT
AGGGCTAGCC GCCTGAGGTT TGGCCTCCCC CTCTCTCCTC CCCAGGGCGG CGTCCCCTGC
GGCATATGTG GCAGGGGGTG CTCGGTGCCC GAGGGCGGCG TGGGATACTG CGGCCTTGTT
AAAAACGTGG GTGGGCGCTT GACTAGGCCA GGCGGCGTGT ACATGGGGGT TCTTGAGTAC
TACTACGACC CAATACCCAC CAACTGCGTC GCCGACTGGG TGTGCCCAGC GTCAACGGGG
AGGGGGTACC CCAAATACGC CAAGTCGCCC GCGGGCGAAG TTGGCTACTA CAACTTGGCC
GTCTTCTACG GCGCCTGTAG CCTCGACTGT CTGTACTGCC AGAACTGGCA CTATAGGAAG
TACCCGAGGC GCCCCGTGTT TGCCTCGGTG GAGGAGCTGG ATAGGGCCAT GGACCGCCGC
GTGTCTTGCG TCTGCTTCTT CGGCGGCGAC CCCGCGCCGC AGGTGGTACA CGCCCTACTT
GTGGCAAAGA GGGCGGCGGA GAAGGGGGTC AGAGTGTGTT GGGAGACGAG CGGCCAACTG
GCGCCGCACC TCTTGGACAA GGTGGTGGAG ATCTCGCTTA AGACTGGGGG AATTGTGAAA
TTTGACCTCA AGGCCTTTAC GCCGAGCGTC TACAAGGCGC TGACCGACGG CGAGGTGGAC
ATAGTGCTTA GAAACTTCAA AGTGGCGGTG CGCCGTTTTA GAGAGCGGCC GGAGGTCCCC
CTGGTCGTGG CCTCGATCCT CCTAGTGCCC GGCTACGTCG ACGAGATAGA GGTAGACCTC
CTCACCAAGT TTATAGCACG CCTAGAGCCA GAGGTGCCCA CTAGATTTTT GGCATTCCAC
CCCGACTACC TCCTCGACGA TCTGCCCCCG ACCTCCATTC GCCATGCGGA GACAGCCGTA
AAAATCGCAC AGGAAAACGG CCTCGTAGAG GTGGACGTCG GCAACGCGTG GCTACTCGGC
GACTACTACT AG
 
Protein sequence
MGFCKLCGRV GITISSRLGV CVDCLRRRPR EALKIAEELH RASRLRFGLP LSPPQGGVPC 
GICGRGCSVP EGGVGYCGLV KNVGGRLTRP GGVYMGVLEY YYDPIPTNCV ADWVCPASTG
RGYPKYAKSP AGEVGYYNLA VFYGACSLDC LYCQNWHYRK YPRRPVFASV EELDRAMDRR
VSCVCFFGGD PAPQVVHALL VAKRAAEKGV RVCWETSGQL APHLLDKVVE ISLKTGGIVK
FDLKAFTPSV YKALTDGEVD IVLRNFKVAV RRFRERPEVP LVVASILLVP GYVDEIEVDL
LTKFIARLEP EVPTRFLAFH PDYLLDDLPP TSIRHAETAV KIAQENGLVE VDVGNAWLLG
DYY