| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0254 |
|---|
| Symbol | |
|---|
| ID | 4909897 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 252442 |
|---|
| End bp | 252834 |
|---|
| Gene Length | 393 bp |
|---|
| Protein Length | 130 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640124006 |
|---|
| Product | HEPN domain-containing protein |
|---|
| Protein accession | YP_001055157 |
|---|
| Protein GI | 126458879 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2250] Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.807587 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCAAG CGCGGAGGAA CTTGGAGTCG GCTGAGCTAG ATTTGGCTAG GGGGTACTAC
GAGTGGGCTT GTTTTAAGGC TCAACAAGCG GCAGAGCTCG CGGTAAAGGC CCTGCTGCGG
GCGAGGGGCG TGGCAAAGGG CGGGCACTCT GTGCTAAAGC TCATTGAGGC GGCAGAGCGG
GAGCTGTCTC TCCAAGCGCC GGGCGAGGTC AAAGAGGTGG CGGCGGAGCT AGACCACTTC
TACACCCCGC CCCGGTGCCC TGACGTATAC GACGAGGGCA ACCCGTTTGA GTATTTCACA
GAGTCCATGG CCATGAGGGC GTTGGAACAC GCGAGGAGGG TCATAAAGTG GGTGGAGGCA
TGGAGTGTGG TAGGTAGTCC CGGGCTCTTC TAA
|
|---|
| Protein sequence | MRQARRNLES AELDLARGYY EWACFKAQQA AELAVKALLR ARGVAKGGHS VLKLIEAAER
ELSLQAPGEV KEVAAELDHF YTPPRCPDVY DEGNPFEYFT ESMAMRALEH ARRVIKWVEA
WSVVGSPGLF
|
|---|
| |