| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0243 |
|---|
| Symbol | |
|---|
| ID | 4909894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 241160 |
|---|
| End bp | 242188 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640123995 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001055146 |
|---|
| Protein GI | 126458868 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.251428 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGTCG TCCGGCTGGA GAAGTTGCGC AAAGTTTTTG ACAGAGTGGT GGCCCTGGAC
GACGTAGACC TCCAAGTGGG CGACGGCGAG ATAGTGGCAG TCCTAGGCCC CTCCGGCTGC
GGCAAGACGA CGCTTCTCCG CCTGGTGGCC GGCCTCGACG AGCCCACCTC CGGCAGAATA
TACTTCGACG ACAGAGACGT CACAGACCTC CCGCCGCAGA AGAGGGGGAC CGCCCTGGTG
CCTCAGACGT GGGCGCTGTG GCCCCACATG ACAGTCTTTG AAAACGTGGC CTATGGGCTA
AGGCTGAGGA AGCTGAGGCC AGAGGAGGTG GCGAAGAGGG TGAAGTCTGT GCTAGAGCTG
GTGGGCCTCA GCGGGCTTGA GAAGAGGAAG CCCTTCCAGC TCTCCGGGGG GCAGCAGCAG
AGGGTGGCGC TGGCGAGGGC CCTGGTGGTG CAGCCAGAGG TGCTCCTACT GGACGAGCCG
CTGGCAAACC TCGACGCAAA GCTAAGGGTT GAGCTGAGGG AGGAGGTTAG GAAGATAGCC
AAAAAGCTGT CTATAACCAC GATATACGTC ACACACGACC AAGAGGAGGC CATGGCGGTG
GCCGACCGCG TCGCGGTGAT GAACGCCGGC AGAATACTAC AGGTGGGGAA GCCTGAGGAG
GTTTACCACA GCCCTGCCCA CTTCTTCGTC GCCACTTTTA TAGGCCGCTC CAACGTCTTG
AGAGGCCGCG TGGTCGAGAG GCGGGGAGAG GCCGCGGTAG TGGACGTGGG CTTCCCCCTG
GCAGCCGTCG CAGTGGACAA GGCGGCCCCA GGCGAGGAGG TCCACGTAGT GTTTAGGCCC
GAGGACGTGT ACATGGGCGG CGGCGGGGTT AAGTGCCAGG TAGAAGACGT GGCGTTCCTA
GGGCGCTACT ACCAGGTCAC GTTGGTATGC GCCGGGCGTA GGATAAAGGC AGAGGGGCCT
AAGCCGCCGG CCCTCCCAGG GGAGGAGGTG GCAGTGGAGA TAGCCAGGGC CTGGGCGTTT
AAGCCATGA
|
|---|
| Protein sequence | MAVVRLEKLR KVFDRVVALD DVDLQVGDGE IVAVLGPSGC GKTTLLRLVA GLDEPTSGRI
YFDDRDVTDL PPQKRGTALV PQTWALWPHM TVFENVAYGL RLRKLRPEEV AKRVKSVLEL
VGLSGLEKRK PFQLSGGQQQ RVALARALVV QPEVLLLDEP LANLDAKLRV ELREEVRKIA
KKLSITTIYV THDQEEAMAV ADRVAVMNAG RILQVGKPEE VYHSPAHFFV ATFIGRSNVL
RGRVVERRGE AAVVDVGFPL AAVAVDKAAP GEEVHVVFRP EDVYMGGGGV KCQVEDVAFL
GRYYQVTLVC AGRRIKAEGP KPPALPGEEV AVEIARAWAF KP
|
|---|
| |