Gene Pcal_0229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0229 
Symbol 
ID4909096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp229174 
End bp229803 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content51% 
IMG OID640123981 
Productsuperoxide dismutase 
Protein accessionYP_001055132 
Protein GI126458854 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0605] Superoxide dismutase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.214662 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGTTA AAAAATATGA ACTACCACCA CTCCCATACG CATACAACGC CCTCGAGCCC 
TACATCGCCG AGGAGATAAT GAAACTACAC CACCAGAAAC ACCACCAGGG CTACGTCAAT 
GGGGCAAACG CTGCCCTCGA AAAACTTGAG AAATTCAGGA AGGGAGAGGC CCAGATAGAC 
ATCAAGGCAG TGCTGAGAGA CCTCTCCTTC CACTTAAACG GGCACCTACT CCACAGCATC 
TTCTGGCCAA ACATGGCGCC CCATGGCAAA GGCGGCGGAA AGCCGGGAGG CCGCACCGCC 
GACTTAATAA ACCAGTTCTT CGGCTCCTTT GAGAAATTCA AAGAGGAGTT TAGCCAAGCC 
GCTAAAAACG TAGAAGGCGT GGGGTGGGCC CTCCTGATAT ACGAGCCCAA GACAGGGCAA 
CTTCTTGTCG TACAAATCGA GAAGCACAAC CTAATGCACA TCGCAAATGC TCAAGTGTTA 
CTGGCGCTTG ATGTGTGGGA GCACGCCTAC TATCTGCAAT ACAAGAACGA CAGAGGGTCA 
TACGTCGACA ACTGGTGGAA CGTAGTCAAC TGGGACGACG TAGAGAAGAG GCTCGAAGAC 
GCGCTAAACG GCAAAATAAC AAAGGTCTAA
 
Protein sequence
MQVKKYELPP LPYAYNALEP YIAEEIMKLH HQKHHQGYVN GANAALEKLE KFRKGEAQID 
IKAVLRDLSF HLNGHLLHSI FWPNMAPHGK GGGKPGGRTA DLINQFFGSF EKFKEEFSQA 
AKNVEGVGWA LLIYEPKTGQ LLVVQIEKHN LMHIANAQVL LALDVWEHAY YLQYKNDRGS 
YVDNWWNVVN WDDVEKRLED ALNGKITKV