| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0222 |
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| Symbol | |
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| ID | 4909967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 222805 |
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| End bp | 224394 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640123974 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_001055125 |
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| Protein GI | 126458847 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0439399 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTGCGTAG TGGAGAAGTG GAGGGAGGAC CCCTTCTACG GCGCCGTGGC GGTGGTCAAG
GCGGAGGGGT ATGTGGTTGG GGATTTCACC GGGGGGATCC ACGGGGCCTT TAGAGACTAC
GTAGAGCTGC CGCCCGGCGT GTACACGGTA GGCGGCGAGG AGTGCGCAAT AGAGCCGCTC
TCCTACCCCT GGCACTTCTC TGTGCCCTAC ATGGCGGCGA GGTGGGGCGA CGTGGTGGAG
CTACGGATAT ACGCCACGGA GGAGCTCGAG GTGCCAGGCG GCTTCGTGGC CAAGCTGGCC
GACGTGGGGC CCTTCTCTGT CTACCTGGCG GCGACGCGGG GCGCCTCCTA TGTTGTAAAG
TGTTGCGGCA GGTCGAGGAG GTTCAAGGCG CCGCACCCCG GCGAGGCCCC CCGCCTCTCT
GCCCTCTACG AGGTTTTGCC AGACAGAGCG GGCCCCGGGC GTGGGTGCAG AGATCTCTCT
AAGCAGTTCT GCGGCGGCAC GTTGAAGGAC GTGGCGGAGC TGGCGGCGGG GGCCGTGGAT
TTCGCAGATG GGCTCTACCT CCACCCCATA TACCCCGCCA TGTCTTACCA CAGATACGAC
GTGGTGAACC ACTTCGACGT AGACGAGAGA GTGGGCGGCT GGGCGGCCTT CTACGCGCTT
AAGGAGGCCT TGTCCAAGGT GGGGATGGGC CTCGTCTTAG ACCTCGTCTT ATACCACGTG
GCTCCCCGAA GCCCGCTCTT CCCCGACGGG CCCTTTGTTA TAAAAAGCGC GGAGGGGGCG
AGGCTTGTGA AAAAACTTGT CGAAATTCTG CCGCGGGAGG CGTTGCGCGG CGTCTTCTCC
GGAGAGCCTC CCTACGAGAC TTTTCTAAAG GTGTGGCTCA TGCCTAGGCT GGATTACACG
CGGCGCGAGG CCGTGGAGTA CGCCAGGCGG GTGGTGGAGT TCTGGGCCCC ACATGTCGAC
GGGTTTAGGC TAGACGTGGC TCACGGCATT CCGCCCGAGG CGTGGCGAGC GGCGCTGGAG
CCCGCCCGAG GCCGGTACGT CTTTGGAGAA CACGTGGGCA ACCCCGCACC CTTCTACCAC
GTAATCAGGG GGTTCACGGC CTACTTCTTG TACCACCACG GGGTCAAGCG CCTCGGGGAG
GGCGTTGAGG AAGTTGCGAG AGGCGTCAAC CGCTACCTGG CTCTGACGCC CCCCTCGGCG
GTTCCCCACA TGAACCTCTT CTTAGAAAAC CACGACTTAG ACAGAGCGGC CTCCTTCCTA
AGCCCCGACG CCGTGGTCAT GGGCTACGCC CTCATATACT CACTGCCCGG AGTCCCCTCA
GTCTACATGG GAGGCGAATG CGGCGAGGTG GGACGCGCCG AAGATCACAC AAATAGGAGA
CCCTTCCCCG GCTGCGGCGG CCATCCGTTG AAGAGCTTTC TCGCCAAGCT CTTCGCCGCG
AGGAAGAGGC TGGGCCTCTC CGCGGGGCCT GCATACGCCT ACACAAGGCG GGGGAGACTG
GTGCTGTGGA GGGGAGACGT GGAAGTGGAG GTGGAGAGGG GGCGGGCCGT GTTTACAAGC
CCCGGGGGCT CCTTGGAAAT CTTTATATAG
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| Protein sequence | MCVVEKWRED PFYGAVAVVK AEGYVVGDFT GGIHGAFRDY VELPPGVYTV GGEECAIEPL
SYPWHFSVPY MAARWGDVVE LRIYATEELE VPGGFVAKLA DVGPFSVYLA ATRGASYVVK
CCGRSRRFKA PHPGEAPRLS ALYEVLPDRA GPGRGCRDLS KQFCGGTLKD VAELAAGAVD
FADGLYLHPI YPAMSYHRYD VVNHFDVDER VGGWAAFYAL KEALSKVGMG LVLDLVLYHV
APRSPLFPDG PFVIKSAEGA RLVKKLVEIL PREALRGVFS GEPPYETFLK VWLMPRLDYT
RREAVEYARR VVEFWAPHVD GFRLDVAHGI PPEAWRAALE PARGRYVFGE HVGNPAPFYH
VIRGFTAYFL YHHGVKRLGE GVEEVARGVN RYLALTPPSA VPHMNLFLEN HDLDRAASFL
SPDAVVMGYA LIYSLPGVPS VYMGGECGEV GRAEDHTNRR PFPGCGGHPL KSFLAKLFAA
RKRLGLSAGP AYAYTRRGRL VLWRGDVEVE VERGRAVFTS PGGSLEIFI
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