Gene Pcal_0220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0220 
Symbol 
ID4908341 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp221593 
End bp222318 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content63% 
IMG OID640123972 
ProductABC-2 type transport system, membrane protein 
Protein accessionYP_001055123 
Protein GI126458845 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0612371 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGACGA TTAAAGACGC ACTGGTCATA GCTTGGATCA ACGGCTGGAT AGCGGCCACG 
AGGGGCTGGA TATGGGTAGT GGCCAGCTCC GTCAGCCCGT TGTCCTTCCT CGTCCTCTTG 
GCCATATACG GCGGCGTAGA GGGGCTCCTG TGGGGAGTGC TGGGGAGCCT GGTCTGGACC 
ATCGCCTCCA ACGGCATCTC GCTCATGGGA GACGCCACGT ACTACCGCCT GGGCATCAAG 
TACCAGTCCA TGCTTACCGC GGCGCCGGTG TCGCCCGTTG GATACGCCAT CGGCCTCGCG 
CTAAGCGCCT TCGTCTTTGC CACCCCCACG CTGGCCTTTT ACATAGCCGT AATCTTATGG 
CTGGGCGTCC CGCTGGCCAG CCCCGTGGCG GCGTACGCCT TGGTCACGCT CTGGCTGGCC 
TCCGCCGGCC TTGGCTTCAC GCTGTCCAGC TTCATAAGAC ACATGAGATA TGCCTGGGCC 
CTCCCCCAGA TACTCACCGC CGTGTTCACC GTGGGAGCCC CAGTCTACTA CCCCGCCACC 
GTCTTGCCCA CGCCCTACCT AGGCGTAGTG GTGCCCACAG GCGCCGCGGG GGTATTGCTC 
CAAGCCGCCA CAGGCCTGGC CAACTACTCC GCAGACCTAC AAGCCGCGGC CGCTGTTGCC 
CTAGCCCTGC AGAGCGTCTT GGGGCTATAC CTATTGGCAA AAGTAGCCAG GTGGAGACAA 
CAGTAG
 
Protein sequence
MKTIKDALVI AWINGWIAAT RGWIWVVASS VSPLSFLVLL AIYGGVEGLL WGVLGSLVWT 
IASNGISLMG DATYYRLGIK YQSMLTAAPV SPVGYAIGLA LSAFVFATPT LAFYIAVILW 
LGVPLASPVA AYALVTLWLA SAGLGFTLSS FIRHMRYAWA LPQILTAVFT VGAPVYYPAT 
VLPTPYLGVV VPTGAAGVLL QAATGLANYS ADLQAAAAVA LALQSVLGLY LLAKVARWRQ 
Q