| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0215 |
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| Symbol | |
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| ID | 4908786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 216409 |
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| End bp | 217833 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640123967 |
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| Product | putative thiamine transport system permease protein |
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| Protein accession | YP_001055118 |
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| Protein GI | 126458840 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.253861 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAGA GAGATAGCCT CCGGGTAATC CCACTCCTTT TTTTGACGGC TTTTCTCGCC
CCGTACCTCA TCCTACTCGC CAGATACGGC ATAGCGTTTG CGGTAGACGA GTACACGCTC
TGGGTTTTTT TCTTTACGCT CGCCCAGGCG TTGGCCTCGG CGGCCTTCTC AGTGGTGGCC
GGGCTAGCCC TACTTCCCAT ATACGTGAGG GCGCCCGCCT TGAAGCCCGT GGTCATGGTG
CCCTTCTTTG CCCCCGCCCT TTCCACTGTG GATGCGCTTA TCCGCATGTT GGGCGACGTG
ATGTACAGCC CCTGGGGCAT AGTCATTGCC CACGTGGTCT ACTACGCGCC ATACGCGGCC
CTTCTGATGG AGTCAAATCT GCGCTCGATC CCCGCCGACA TTTTAGACGC GGCGGAGATA
TACGCCAGAC GCCTCTCGAC GAAGGCCAGG GTCATCTTCA CAGAGCTGAA GCCCTCCCTG
GCCTACTCCT TTTACACAAT CTTCGTGTTT AGCTTTCTCA CATTTACCAC GCCTCTCCTC
CTCGGCGGAC GCTATCCAAC GCTAGAGCTC TTGGTCTACC TATACGCCAC CTCCTTTGCC
TCAACTCAGC TTGTGTCAAC CGTGGTCTTG ATCACGCTCC TCTCCTCCCT AGCCCTCGCA
CTTCCCTTCT TCAAGTTGCC CACGTTGCCG CCAGCCGAGC CCTCGCCGCG GGCACCGAAG
CTGGGCCTCC CCGCCGTGTT GCCCTCTCTG CCCCTCGCCC TCTTCTACCT AGCGCTGGCG
GCCTACCTAG TCCTCCCAGC GGCGTCTCCC AGGGGGCTAG AGGGGGCGTG GACGCCGTTG
GTCAACAGCC TACTAGTGGC GCTGGCATCC TCCGCAATTT CGCTGGCCCT CGCAGTGTCC
TTCCTCTTCT CGGACGTAGT GGGCTCCAGA CTGCCTGCGG TCTCCTACGT CGCCGCCATT
TCGCTTTCGA AGAGCCTCTT CGCAATAGGC TTCTTCCACC TGGCCCAGCC CCTCTACGGC
ACTCTGCCAA TCCTCCTCGT GGCCCACGTG TTCGTAATCA CGCCCCTCGT CTACTCCATC
GTCAAGCCGG CCTTTGAGAA AATTAGGCAA GACGCCAGAG AGGCCTGCCT ACTCTACCTA
GGGCCAGTCA GATGTGTGGC TAGGATTCTC TCGGAGGCTC TGGGCCCCAC AATTGTCCAG
GCGTGGCTCG TGGCCCTCGC CTCGTCGATA TCTGAGACAA CGCTCGCCTT CATCTTGACC
ACCGGCGCCG CCTCCACGCT GTCGGCGGAG GCCGCCAGGC TTTTGACCTC GCGGGCCCCC
GACCTAATTG AGACAGGGCA CTTCTACTCC TCGCTTATGG CAGTCATCGT CTTGGCGACT
CTGGCCCTCT CAAGGCTTGT AAAAACCAAG CCCTACGCCT TCTGA
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| Protein sequence | MAERDSLRVI PLLFLTAFLA PYLILLARYG IAFAVDEYTL WVFFFTLAQA LASAAFSVVA
GLALLPIYVR APALKPVVMV PFFAPALSTV DALIRMLGDV MYSPWGIVIA HVVYYAPYAA
LLMESNLRSI PADILDAAEI YARRLSTKAR VIFTELKPSL AYSFYTIFVF SFLTFTTPLL
LGGRYPTLEL LVYLYATSFA STQLVSTVVL ITLLSSLALA LPFFKLPTLP PAEPSPRAPK
LGLPAVLPSL PLALFYLALA AYLVLPAASP RGLEGAWTPL VNSLLVALAS SAISLALAVS
FLFSDVVGSR LPAVSYVAAI SLSKSLFAIG FFHLAQPLYG TLPILLVAHV FVITPLVYSI
VKPAFEKIRQ DAREACLLYL GPVRCVARIL SEALGPTIVQ AWLVALASSI SETTLAFILT
TGAASTLSAE AARLLTSRAP DLIETGHFYS SLMAVIVLAT LALSRLVKTK PYAF
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