Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_0207 |
Symbol | |
ID | 4909684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 206229 |
End bp | 207344 |
Gene Length | 1116 bp |
Protein Length | 371 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640123959 |
Product | TRAP transporter solute receptor TAXI family protein |
Protein accession | YP_001055110 |
Protein GI | 126458832 |
COG category | [R] General function prediction only |
COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.979925 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTAA TACAACGTTC TATGGATAAA AAAGTCGGCA TATTAATAGC AATCGTAGTG GTAATTATCG CCGCAGTATT AGCCGTATGG CTCGCGTCGA CGCCTCCCCC CACTACCACT CCCAAGCCCG CCACTCCATC TCCAACCACT ACAACTACAC AGCCCACCAC CACGCAGGCT CCCACAGTCT CCAGAATAAC CATAGCCACA GGCGGAATTG GCGGGGTCTA CTACTACTAC GGGTCCATAA TTGCCTCTAT TTTGAACAAT TACACAGACA TTAGAGCTAA CGCAATACAG ACGGCGGCCT CTATTGACAA TCTTTTGCTA ATTAGAGACC GCGGCGTGGA GTACTGCGCC ACTACGTTGC CCGACAGCGC ATATCTAGCG TACACAGGCC AGCATCCAAA ATTCGCCAAT AAGACGGCGC CGATAGCCAT TCTATGGGCC ATGTACCCCA ACTACCTCCA CATAGTCACA AAGGCCTCCA CGGGCATTAA GACGATATAC GACCTGAAAG GGAAGAGAGT CTCCACAGGC GCGCCAGGTA GCGGCACTGA GGTAAATGCG CTATCTGTTC TACAACTGGT CGGCATAGAC CCGGCAAAAG ACTTCGCCAA GTGGGAAAAA CTAGGTGTAC AGGAAAGCGC TAAGGCGCTT GCAGACGGAA CAATAGACGC ATTCTTCTGG TCGGGCGGAC TGCCCACAGG CAGCATAGTC GAGCTAAGTG CGCTTCTAAA ACAGCGGGGA GACCAAATTG TGCTAATCTC CATCCCCGAC GACGTGATAA AGGCCTACGC AGAGAAATAC CCCGGCGTCG CGGCTAGGGG TGTAATACCC GCGAGCGTAT ACGGCGCGCC TCAAGACGCC GTGACACTGG CATATTGGAA CTTCTTCGTA TGTCACAAAG ACCTACCGGC AGACGTGGCC TACAAGATTA CAAAAGCCGT ATTCGAACAC TTAGACATAC TCCAGAAGTC CGTGGCGGCG GCCAAAGACA CTAACCTAAA GAATGCGCTA ATAGCGCTAG GCGGCAAAAT CCCCTACCAC CAAGGCGCCT TGAAATACTT CTGCGAAGCA GGGCTGCAAC AAGCTTGTCA AGCATTATCA AAGTGA
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Protein sequence | MKLIQRSMDK KVGILIAIVV VIIAAVLAVW LASTPPPTTT PKPATPSPTT TTTQPTTTQA PTVSRITIAT GGIGGVYYYY GSIIASILNN YTDIRANAIQ TAASIDNLLL IRDRGVEYCA TTLPDSAYLA YTGQHPKFAN KTAPIAILWA MYPNYLHIVT KASTGIKTIY DLKGKRVSTG APGSGTEVNA LSVLQLVGID PAKDFAKWEK LGVQESAKAL ADGTIDAFFW SGGLPTGSIV ELSALLKQRG DQIVLISIPD DVIKAYAEKY PGVAARGVIP ASVYGAPQDA VTLAYWNFFV CHKDLPADVA YKITKAVFEH LDILQKSVAA AKDTNLKNAL IALGGKIPYH QGALKYFCEA GLQQACQALS K
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