Gene Pcal_0205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0205 
Symbol 
ID4909810 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp203888 
End bp204577 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content63% 
IMG OID640123957 
Producthypothetical protein 
Protein accessionYP_001055108 
Protein GI126458830 
COG category[S] Function unknown 
COG ID[COG1801] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.967531 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAAGTAT ATGTCGGCAC CTCGGGCTGG CTCTACTCGT GGAACTTGGG CAAGTCGCTT 
AAGTGGTACG TGGAAAACTC GGGCCTCAAC GCAGTTGAGC TAAACGCAAG CTTTTACCGC 
TACCCCACGC CGAGGCAGGT GGCCCAGTGG GCAGAGGTGG GAAAGACGCT GAGGTGGGCG 
GTGAAGGTCC ACCGCGGCGT CACTCACCTC GGCCGCCTCT CGGATAGGGC TGTGGAGAGG 
CTGGGCAACT TCCTCAGCCT CTTCAAGCCC CTCGACCCCC TAGTGGACTT CTACCTCTTT 
CAGCTACCCC CCACCTTTCG GCCCAGCGGC GAAAACATGC GCAGAGTGGA GGCGGTGGCG 
GCCCTCTTGG GGAGGCGCGC GGCCGTGGAG TTTAGGCACC CCGGCTGGTT TACCGAGGCC 
ACGGCTAAGT GGGCCGAGAG GGCGGGCTTC GTGGCTGTGT CTGTGGACTC CCCGGAGGCG 
TCTTGGATAG TGGCCACGGG GGGCGTGGTG TACTTGAGGA TGCACGGGCG CACCTTCTGG 
TACTCCCACT ACTACGACGA GGAGGAGCTC CGTGAGGTGG CCAGGCGCAT CGTAGAGACG 
GGGGCCGAGC GGGTCTACGT CTTTTTCAAC AACGACCACG CCATGTTGGA AAACGCCAGG 
GCAATGGCGT CGATTCTCAG AGGCCTTTAA
 
Protein sequence
MEVYVGTSGW LYSWNLGKSL KWYVENSGLN AVELNASFYR YPTPRQVAQW AEVGKTLRWA 
VKVHRGVTHL GRLSDRAVER LGNFLSLFKP LDPLVDFYLF QLPPTFRPSG ENMRRVEAVA 
ALLGRRAAVE FRHPGWFTEA TAKWAERAGF VAVSVDSPEA SWIVATGGVV YLRMHGRTFW 
YSHYYDEEEL REVARRIVET GAERVYVFFN NDHAMLENAR AMASILRGL