| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0182 |
|---|
| Symbol | |
|---|
| ID | 4909432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 174542 |
|---|
| End bp | 175639 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640123933 |
|---|
| Product | D-proline dehydrogenase |
|---|
| Protein accession | YP_001055085 |
|---|
| Protein GI | 126458807 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTGG CGGTGGTCGG CGGAGGCATC GTCGGCCTCT TCGCGGCGTA TTTTCTGAGG
AGGGAGGGCG CCGAGGTCGT GGTGGTGGAG CAGGGCGAGG TGGGCGGGTG GTCTAGGGCG
GCGGCGGGCA TTCTGGAGTT CACCAGGTTT GTGATCAATA GGATCAACGT GCGGTCCTAC
CCCCTGAACT ACTTCAAGAT GGCGCTGAGG GGAAACGCAA GGGTGAAGAC TTGGGACTGG
AGGTGGATCT CCGCTTATCT AAGGGCCTGG GGGAGGGAGC CGCCGCAGGA GATGTGGGAG
GCCGTGAAGG CGCTTGGGGA GTTCTCCCGA AGGCACTACC GGGCCATGGC CGAGGAGCGC
AACGACTTCG ACTACGCCGA GGAGCCGCTC TACGAGGTGG GCGTCGACGT GGGGAAGGCG
CTGGAGGAGG CCAAGAGGGA CCCCCTCGCC CCCCGCGTAG AGGCGGGGGA GTGCTGCGGC
AGAGAGGCCC TGGTCTACCT AGACGCCGCG AAGCTGTCCA CAGACGCCTT CGTGGAGAGG
ATGAAGAGGG AGCTGGAGGG GGTGGAGTTC GTGAGGGCGA GGGCGGCGGA GGTGGCGGGG
GGAGAGGTGT GGCTGGAGGG CGGCGGCGTG GTTAAGGCGG ATGCGGTGGT GGTGGCGGCT
GGGTACTGGG CCAGGAGGCT GGGCATACCC GTGGCCCCCT TCAAGGGCTA CGGGTTTAGA
ACCACTGCCA AGGCGGGGAA GATGTTCGTG GACATGTCTA AGGGAGTGGC CGTGGTCCCC
CTATCCAGGT GGACAAAGGT CACCGGGCGC TTTGACTTAG ACGGCACGGG GGACCACCGC
CCTGCTGAGA GGGTGCTCAA GAGGGCGAGG GAGGCCTTGG GCGACTTCCA GGCTGTCGAC
ATGGCGGTGG GCTACCGGCC CTGTACCCCA GACGGCTTCC CAGTGGTAGA CAGAGTGGGG
TCCGTGGTGG TGGCGACGGG GGCCTGCCGC CTCGGGTGGA CCTACGGCCC AGCCCTGGGG
AGGCTGGCAG CAGACCTGGC CCTTGGGAAG AGGGGGCTGG ACGCCCTCTC AGCCGCCAGG
TTCTTTAGAC GCCTGTGA
|
|---|
| Protein sequence | MKVAVVGGGI VGLFAAYFLR REGAEVVVVE QGEVGGWSRA AAGILEFTRF VINRINVRSY
PLNYFKMALR GNARVKTWDW RWISAYLRAW GREPPQEMWE AVKALGEFSR RHYRAMAEER
NDFDYAEEPL YEVGVDVGKA LEEAKRDPLA PRVEAGECCG REALVYLDAA KLSTDAFVER
MKRELEGVEF VRARAAEVAG GEVWLEGGGV VKADAVVVAA GYWARRLGIP VAPFKGYGFR
TTAKAGKMFV DMSKGVAVVP LSRWTKVTGR FDLDGTGDHR PAERVLKRAR EALGDFQAVD
MAVGYRPCTP DGFPVVDRVG SVVVATGACR LGWTYGPALG RLAADLALGK RGLDALSAAR
FFRRL
|
|---|
| |