Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_0178 |
Symbol | |
ID | 4910006 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | - |
Start bp | 171030 |
End bp | 171929 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640123929 |
Product | extracellular solute-binding protein |
Protein accession | YP_001055081 |
Protein GI | 126458803 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGCG TAGTGGCGTC AATAGTGGCG TTGGTGGTTG GCTTGTTGTT GGGATACCTC TTGGGCGTAT ATACCGCGCC TCAAGCAACT ACTCCTCAAG CTCCGGCGCA GACGGCCACC ACTGCGCCGG CGACTGCCAC AGCCACTGCT CCTTCAACGA CGCCTCAGGC CGCGTCTCAG TGCCCCGTCT CTGTGGACGT TATCAAGAAG CGGGGGAAGC TTATCCTTGG CACAGACGCC ACGTGGCCGC CTTGGGAGTG GGTTAGGGGG AACGAGATAG TGGGGTGGGA CATAGACATA GCCAGGGAGA TTGCCAAGGC GCTTGGGGTT CAGCTGGAGG TGAGGGACAT GCGCTTCGCC GGCCTCTTGG AGGCGGTGAG GAACGGCGAC GTGGATTTGG CCTTGAGTGC CATCACGTGG ACTTCTGAGA GGGAGAAAGT TCTGGAGTTC TCCATGCCGT ACTACCTGGA GTCGGTGGTG GTTGTGACTT TGGCGAAGCG CACCGACATT AATAGGGTGG AGGACCTCTA CGGCAAGACT GTGGGTGTTC AAATTGGGAC TACTCACGAG GAGTGGGCGG CGGAGAACTT GGAGAAGCCG GGCAAGGCGG CTGTGAGGCG GTACGACAAG GTGTACCCCT ACATGGTTGA GGTGTTGAGG AGGGGGGACG TGGACGCCAT TATCTTGGAC AGGTCTATCG CCACGGCGCT TGTGAGGAAG TTCCCCGACT TGAAGATCTC CTTCGAGATC CCCGGCACTG CTGGCTACAT CTCCGTGGCT ATGCCCAAGT GCGCGCAGGA CTTGAAGCTG GTGGTGGACC AGGTCATTGA GAACCTCATG CAGACGGGGA GGCTTGACGA GATTTTCCAG CGCAACTTCG AGCTGTTTCT CCAGTCGTAA
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Protein sequence | MKSVVASIVA LVVGLLLGYL LGVYTAPQAT TPQAPAQTAT TAPATATATA PSTTPQAASQ CPVSVDVIKK RGKLILGTDA TWPPWEWVRG NEIVGWDIDI AREIAKALGV QLEVRDMRFA GLLEAVRNGD VDLALSAITW TSEREKVLEF SMPYYLESVV VVTLAKRTDI NRVEDLYGKT VGVQIGTTHE EWAAENLEKP GKAAVRRYDK VYPYMVEVLR RGDVDAIILD RSIATALVRK FPDLKISFEI PGTAGYISVA MPKCAQDLKL VVDQVIENLM QTGRLDEIFQ RNFELFLQS
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