Gene Pcal_0154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0154 
Symbol 
ID4909508 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp147598 
End bp148722 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content61% 
IMG OID640123904 
Productcitrate synthase 
Protein accessionYP_001055057 
Protein GI126458779 
COG category[C] Energy production and conversion 
COG ID[COG0372] Citrate synthase 
TIGRFAM ID[TIGR01800] 2-methylcitrate synthase/citrate synthase II 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.649155 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTACT TCCCAGGGCT GGAGGGGGTG GTGGTAAAAG AGACTGAGAT CTGCCACATC 
GACTTGGAGA ACTCGAAGAT ATACTACAGG GGCTACGACT TGGAGGAACT CGCCGAGAGG
TCCACCTTTG AGGAGACGGC GTACCTACTG CTCTATGGAA AACTCCCCAC CCGCGGCGGG
CTTGAGCAGT TCAAGGCCGT GCTGAGGGGC AACAGAGCGC CGCCTCAGCA CGTCACCGCC
GTACTCCAGC ACTTGCCCAA GTCGGCGGAG CCCATAGACG TGTTGAGGAC TGGGGTGTCG
GCCATGGCAC ACGGGGAAGA TCTCAGGGAC AGATCCCCCG AGGCCGAGCT CGCGAGGGGG
GTGCGGATTA TGGCGGCGAT GCCGTACATA GTTGCGGCGT GGCACAGAAT TAGGACAGGC
CAACAGCCCC TTTCGCCAGA CGCCGACAGC CACGCGGAGT ACTTCCTAAA GGCCCTAAGG
GGTAGCGACG TCTCCCCCCT AGAGGCGAGG GCGATGGACG TCATGTTGAT AATATACGCC
GAGCACAGCA TGAACAACAG CGCCTTCACC GCAGTCACAG TGGCCTCCAC TCTCTCCGAC
ATGTACGCCG CTGTGACAGC CGCCATCGCC AGCCTCAAAG GCCCACTACA CGGGGGAGCC
AACGTGGATG CGGCCCTCAT GATAGAGGAG ATAGGCGACG AGGGGAACGT GGAGAAGTGG
GTAGACGCCG CGCTGGCCGC CGGGAGGAGG ATACCCGGCT TCGGCCACAG GCTGTACAAG
AGGGGGCCCG ACCCGCGGCT GAGGGTATTG CGAAGACTCG CCAAGGAGCT AGCCTACGCC
AAGGGAGACA CCAAGTACTA CGCCATTGCC CAGAGACTTG AGGAGTACGT CACGGCAAAG
CTCGCCGCCA AGGGCATATA CCCCAACACA GACCTCTACG CCGCGGTGAT ATTCAAATAC
CTAGGCCTCC CCGTGGACAT AAACCTCCCC ACCTTCGCCA TATCCAGAGT AGCCGGCTGG
GTGGCACACG TCGTGGAGTA CAGGAGGAAG AACAGGCTGA TACGCCCCAC CGAGAAGTAC
ACAGGCCCCA TAGGGCTGAA ATACGTGCCA ATAGAAGAAC GCTGA
 
Protein sequence
MAYFPGLEGV VVKETEICHI DLENSKIYYR GYDLEELAER STFEETAYLL LYGKLPTRGG 
LEQFKAVLRG NRAPPQHVTA VLQHLPKSAE PIDVLRTGVS AMAHGEDLRD RSPEAELARG
VRIMAAMPYI VAAWHRIRTG QQPLSPDADS HAEYFLKALR GSDVSPLEAR AMDVMLIIYA
EHSMNNSAFT AVTVASTLSD MYAAVTAAIA SLKGPLHGGA NVDAALMIEE IGDEGNVEKW
VDAALAAGRR IPGFGHRLYK RGPDPRLRVL RRLAKELAYA KGDTKYYAIA QRLEEYVTAK
LAAKGIYPNT DLYAAVIFKY LGLPVDINLP TFAISRVAGW VAHVVEYRRK NRLIRPTEKY
TGPIGLKYVP IEER