Gene Pcal_0146 details

Gene Information

• Locus tag: Pcal_0146
• ID: 4908384
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: -
• Start bp: 140962
• End bp: 141510
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 640123897
• Product: ZPR1-like zinc finger protein
• Protein accession: YP_001055050
• Protein GI: 126458772
• COG category: [R] General function prediction only
• COG ID: [COG1779] C4-type Zn-finger protein
• TIGRFAM ID: [TIGR00310] ZPR1 zinc finger domain; [TIGR00340] ZPR1-related zinc finger protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGATCTACG AGACTGAAAC GAGGTGCCCC GTATGTGGAG CCAAGGCATT TAGATACGTG 
GAGTTCCTCT ACGACGTCCC ATTCTTTGGC AATGTACTCA TACAAAGCGG GGTGTGCACG 
GCGTGCGGCT ACCGGTACTT CGACATAGTC TACGCAGACG CGGGGCGCCC CACGCGGGTC 
ACCTTCACCG CGAGAGACGG CCTCGACGTG GCTAAGTCGT TGCTCATTAG GAGCCGCACG 
GGGCGCATCT ACTCCCCCGA CCTGGGCTTC GAGCTTGAGC CAGGGACGCA GGGGGAGGCC 
ATGATCACCA CAGTGGAGGG CTTCCTCTAC AAGGTGGTGG ACTACGCGGA GAGGCTCAAG 
GTGCTGGAGC CCGAGAAGGC CGACGTCGTC GACGCCTTCA TACAGAGGGT ATACGAAAAG 
ATCGAGAATG GGGGCTTTAC CCTGGTTGTG GAGGACCCCC AGGGGAAGTC CTTCATTTCG 
CCGTACAGGC CCGACACAGT GCAAGTGGAA TACCTCGACG AGGGTCAAGC CGGCACTCCT 
CCACAGTAG 

 

Protein sequence

MIYETETRCP VCGAKAFRYV EFLYDVPFFG NVLIQSGVCT ACGYRYFDIV YADAGRPTRV 
TFTARDGLDV AKSLLIRSRT GRIYSPDLGF ELEPGTQGEA MITTVEGFLY KVVDYAERLK 
VLEPEKADVV DAFIQRVYEK IENGGFTLVV EDPQGKSFIS PYRPDTVQVE YLDEGQAGTP 
PQ