| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0107 |
|---|
| Symbol | |
|---|
| ID | 4909925 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 105312 |
|---|
| End bp | 106247 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640123858 |
|---|
| Product | 2-oxoglutarate ferredoxin oxidoreductase subunit beta |
|---|
| Protein accession | YP_001055011 |
|---|
| Protein GI | 126458733 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit |
|---|
| TIGRFAM ID | [TIGR02177] 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00446631 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGTTCAAA CAAGGCGTAC GCCCGCCGAC TACCGCTGGG TGAGGCCCCC CGAGTGGTGC
CCCGGCTGTG GACACTTCGG CGTTTTACAA GCCGTCTACA ACGCGTTCGC CGAGCTGGAC
CTAGACCCCT CCAGAGTCGT CCTAGTCTCT GGCATTGGGT GCTCCTCGAG ACTCCCTCAC
TTTGTAAAAA CCACCAGCGT CCACGCCATC CACGGCCGCG CCATCCCCTA CGCCATGGGG
ATAAAGCTGG CCAACCCGTC GCTGGAGGTG GTGGTGGTAG GCGGCGACGG CGACTTAATG
GCCATAGGCG GAAACCACCT ACTCCACATG GGCAGACGCA ACATAGACAT GACCGTCATA
TTGATGGACA ACTCGGTCTA CGGACTCACG AGGGGTCAAG CAGGGCCGAC ACTGCCCGCG
GGGATAAAGG TAAAGGCGAT ACCCAAGGCA AACCCCCAGT CGGAGATAAA CCCGCTCCTC
CTCGCCTTAA CCGCCGGCTT CACGTTCATA GCCAGGGGCT ACTCCTACGA CATAAAATAC
ACCACCAAGC TGATAGTAGA AGCCATAAGG CACAAGGGGT CAGCCTTTGT CCAAATATAC
AGCCCCTGCG TCACCTACAA CAACGTCATG ACAAGAGAGT GGTACGAGAA GAGGATATAC
AAGCTGGAGG AGGCCGACCC CACCTGGGAC CCCGTGGTAC ACGACGAAAA AGAGGTAGAC
ATAAAGATAC GCAAGGCGCT GGACAAAATC GTGGAGAGAG ACAGACTCCC ACTCGGCATA
TTCTACAAAA ACGAGCTCGT CCCAACCTTC GAAGAGCGGT ACGAGGCCAT ATACGACCCA
CACTATAGGA AGCTACCCCC CGCCATACAG CCCATCGAAG TAGACGGACG GCCAGTAGTA
GACCTAGAGA AGCTACTGGC CGACAGAATT CTATAA
|
|---|
| Protein sequence | MVQTRRTPAD YRWVRPPEWC PGCGHFGVLQ AVYNAFAELD LDPSRVVLVS GIGCSSRLPH
FVKTTSVHAI HGRAIPYAMG IKLANPSLEV VVVGGDGDLM AIGGNHLLHM GRRNIDMTVI
LMDNSVYGLT RGQAGPTLPA GIKVKAIPKA NPQSEINPLL LALTAGFTFI ARGYSYDIKY
TTKLIVEAIR HKGSAFVQIY SPCVTYNNVM TREWYEKRIY KLEEADPTWD PVVHDEKEVD
IKIRKALDKI VERDRLPLGI FYKNELVPTF EERYEAIYDP HYRKLPPAIQ PIEVDGRPVV
DLEKLLADRI L
|
|---|
| |