| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0078 |
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| Symbol | |
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| ID | 4909721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 73027 |
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| End bp | 75153 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640123831 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001054984 |
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| Protein GI | 126458706 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1204] Superfamily II helicase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.605857 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAGGTCT CTGAGCTTCC TCTGGACGCC AGGCTCATTG CCGTGCTTAA GGAGCGTGGG
GTGGGGCGGC TGTTTCCGCC TCAGGTGGAG GCGGTGAGGG CCGGGATTTT TGACGGGAGG
AGCGTCTTGT TATGTACGGC GACTGCCTCG GGGAAGTCGC TTTTGGCCGA GGTGGCGGCG
GTCAAGGCGG GCTTGGAGGG GCGCATGGCG CTCTACGCTG TGCCCCTCAA GGCTCTTGCC
TATGAGAAGC TTGTCCACTT CTCCTACTAC AGGGGGCTTG TGAAAGTGGG GGTGTCTACC
GGCGACTTTG ACTCGGACGA CAGGCGGCTC CACGAGTTTG ACGTGGTGGT GGTTACGTAT
GAGAAGTTGG ACAGCCTCCT GCGCCATAGG CCGAACTGGC TCGGGCTCGT GGGCGTCGTG
GTGGTGGACG AGATTCACTA CCTGGGGGAC CCGAGGAGGG GGCCCGTCCT CGAGTCTATT
GTGGCTAAGC TGAGGCACCT CGGCCTAAAA ACCCAGTTCA TCGGCTTGAG CGCCACTGTG
GGGAACGCGG GGGAGGTGGC GGCGTGGCTT GGGGCTAGGC TTGTGGAGTC TAGCTGGCGG
CCAGTGCCCC TCAGAGAGGG TGTGTACCAC GGCGGGGTGA TCCGCTTCTC CGACGGCTCC
ATGCAACGCG TGAACGCGCC GGGGGACGCG GAGGTGGCCT TGGCTGTGGA CGCGGTGGCA
GGCGGGGGCC AGGCCCTGGT CTTCACCAAC AGCAGGAGCT CCACCGTCAG ACTGGCCAAG
GCCGTGGCGA AGGCCATGGA GGCGGCCGGC CTTGTGCCGC GGGGGGCCAA GGCGCTGGCC
GAGGAGGTCC TCAAGGCGTC CTCTAGCAAG ATCATTGGCA GAGAGCTCGC CGACCTTGTG
GCGAGGGGGG TGGCGTTCCA CAACGCGGGG CTTGAGCTAG AGGTGAGGAG GCTTGTGGAG
GATGGGTTTA GGAGGGGCTT GCTCAAGGTG GTGGTGTCTA CCACGACTCT GGCGGCCGGG
GTCAACCTCC CGGCGAGGCG TGTGGTGGTC GCCGACTACG AGCGCTTTGA CCCAGCGCTT
GGCCGGGAGG AGATCCCCGT GCTTGAGTAT AGGCAGATGG CGGGGAGGGC GGGGAGGCCT
GGCCTGGATC CATACGGCGA GGCTGTGCTT GTGGCGAGGA GCAAGGGGGA GGCGGAGTAC
CTAATGGAGC GCTATGTGAG GGGGCAAGTG GAGGGGGTCC GCTCCCACAT CTTGGCTGAG
CCCAACCTCA GGGCCCACGT GCTGGGCGCC GTGGGCGGGG GCTACGCCAA GTCTCTAGAC
GACCTTGTGG ACTTCTTCTC CAACACCCTG GGCGCGGCGC AGATGAAGAC CTCGCTCAAG
TTGTCTATCC TCAGGTCTAA GATCGGCGGC GTGGTGGAGG AGTTAGTGGA GTGGGGCTTC
CTTGAGCGAG ACGGCGACTT TGTATATGCC ACGGAGCTTG GGAGACAGGT GGCTAGGCTT
TACCTAGATC CAGAGGTGGC CGCCGGCTAC ATACGGCTGA TCAAGTCGCT GAGGGCGGGG
AACGTGCCTG CCTACCTCTA CGTGGTCTTG ACAGCCCCCG ACTTCCCCAG GGTGAGGAGG
GGCAGGGCGG ACAAGCGTGT GGTAGAGGGA ATCCTCGCGG CGTTGGATGT GGAGGAGGAC
GAGGAGTTTG AGGACTTGGC CCGGACCGCG TCTATGCTCA TGGCGTGGAT TGAGGAAGTC
GACGAGGACG TGATATATGA GAAGTTCGAC GTGGCTCCGG GCGATTTGAG GGTGTACGTG
GATTTGTTCC AGTGGCTTGG CAACGCCGCG GCCAAGCTTG CGCGTCTCGT GGGCCGCGAG
GAGCACGGGA AGAGGCTTGA GGTGGTCACG GCGAGGGTGG TGTACGGGGT GAGGGAGGAG
CTCTTAGGCC TAGTGACCTC TCTCAGGGGG GTGGGGCGCG TCAGGGCCCG CACGCTCTAC
AACTTTGGCT ACAGGACGCT TGAGGACATA GCCAGGGCTA CCGTTAGAGA GATTGCCTCG
TTGCCGGGCT TTGGGGAAAA ACTGGCGGAG TCTGTGATTG AGCAGGCTAG GCAGATGCTG
GCCGAGGGGC TACGGGGGGA GGTCTAG
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| Protein sequence | MEVSELPLDA RLIAVLKERG VGRLFPPQVE AVRAGIFDGR SVLLCTATAS GKSLLAEVAA
VKAGLEGRMA LYAVPLKALA YEKLVHFSYY RGLVKVGVST GDFDSDDRRL HEFDVVVVTY
EKLDSLLRHR PNWLGLVGVV VVDEIHYLGD PRRGPVLESI VAKLRHLGLK TQFIGLSATV
GNAGEVAAWL GARLVESSWR PVPLREGVYH GGVIRFSDGS MQRVNAPGDA EVALAVDAVA
GGGQALVFTN SRSSTVRLAK AVAKAMEAAG LVPRGAKALA EEVLKASSSK IIGRELADLV
ARGVAFHNAG LELEVRRLVE DGFRRGLLKV VVSTTTLAAG VNLPARRVVV ADYERFDPAL
GREEIPVLEY RQMAGRAGRP GLDPYGEAVL VARSKGEAEY LMERYVRGQV EGVRSHILAE
PNLRAHVLGA VGGGYAKSLD DLVDFFSNTL GAAQMKTSLK LSILRSKIGG VVEELVEWGF
LERDGDFVYA TELGRQVARL YLDPEVAAGY IRLIKSLRAG NVPAYLYVVL TAPDFPRVRR
GRADKRVVEG ILAALDVEED EEFEDLARTA SMLMAWIEEV DEDVIYEKFD VAPGDLRVYV
DLFQWLGNAA AKLARLVGRE EHGKRLEVVT ARVVYGVREE LLGLVTSLRG VGRVRARTLY
NFGYRTLEDI ARATVREIAS LPGFGEKLAE SVIEQARQML AEGLRGEV
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