Gene Pcal_0070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0070 
Symbol 
ID4909596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp65872 
End bp66549 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content56% 
IMG OID640123823 
Producthypothetical protein 
Protein accessionYP_001054976 
Protein GI126458698 
COG category[S] Function unknown 
COG ID[COG4021] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.979925 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTATATTA ATGTGGCCCA CGTCGTCTCT ACCCTGGTAA GACTAAACCC AAAGGCCCTC 
GAAGCCTCGT ACCGAGAACG CGAGGCCGTA TGCGAGCCCG CGGCGCCCCC CTTCGCCGTT 
AGACTAGACG GAGTTGGATT TGGCAAACGT CTAAGGGACT TCCCACACCC CCGGAGCAGG 
GTTGTACACG AGGCTCTGGT AGATACTGCA AAAACGCTTG CGGCTACGTA CGGCGCAGAG 
CTTGTACACG TGGTAAGCGA CGAGATAAAC CTAATTTTCC TGGGGCAAGC CCCCTATGGG 
GGGAGGACGT TCAAGATAGT GAGCGTGCTG GCGGCACACG CGGCCTCTGA GCTCACCGCC 
AGACTCGCCA GGCCGTTGCA CTTCGACGGG AGAGTGATAA GGCTAAGAGA TAGGTGCGAT 
GCCGCGACAT ATGTCTTGTA CAGGGCGAGA GTCGGGCTAA ACAACTACGT GGTCCAGTTG 
GCCAGAGGAG CTGGGCTAAT CAATTCACAT ACGCCGCATA TAGAGGAACT CCTCCCCAAG 
GTCGAAATTG CGGACTTTGA GCTGGCGTGG GGGTCGACCA TGAAAAAGGA GGGAGGTTAT 
AGGCGAGAGG GGCTATGCGA GGCGTTGGTT GCCCTATGCG ATGTATGTAC TAGCGGTACT 
TCTCCTCGAG GTATTTAA
 
Protein sequence
MYINVAHVVS TLVRLNPKAL EASYREREAV CEPAAPPFAV RLDGVGFGKR LRDFPHPRSR 
VVHEALVDTA KTLAATYGAE LVHVVSDEIN LIFLGQAPYG GRTFKIVSVL AAHAASELTA 
RLARPLHFDG RVIRLRDRCD AATYVLYRAR VGLNNYVVQL ARGAGLINSH TPHIEELLPK 
VEIADFELAW GSTMKKEGGY RREGLCEALV ALCDVCTSGT SPRGI