Gene Pcal_0066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0066 
Symbol 
ID4909335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp62370 
End bp63029 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content54% 
IMG OID640123819 
ProductHhH-GPD family protein 
Protein accessionYP_001054972 
Protein GI126458694 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCTTG GGGAGTTCAT AGACGCCGTA GACAAGACCG TGGAGTTGAG ACTAAACGAA 
TTCATAGCGC CGGTGGTTTG GCGCAGGGGC GGCAATCTTT TCGAAATGGC TGTGGCAGTG 
GTGTTGAGCC AAAATACATC GGACCGCAAC GCCTTTAAAG CGTATGACCA ACTGAAAAGG 
CGGCTCGGGG AAATTACACC AGAGGCGGTC CTACAGCTCT CGGAGGACGA GCTCGCCGAG 
TTGATCAAGC CAGCTGGCAT GTACCGCATA AGGGCCAGGA ACATTAGAGC CTTGGCAGAT 
GCGTTTATAC GCCACAAGGT GACGCCCGAG AAGCTCAGGG AGATGGGCCC TGTCGAGGCT 
AGGAAGTTCC TCCTCTCTCT GCCGGGCGTT GGAGAAAAGA CGGCCGACGT AATCTTGGTG 
AATCTGGGTC TTCCCGCGTT CCCCGTTGAT ACACATATAA GGCGGATAGC TAAGAGGTGG 
GGCATTGTGG GCAACCACGG CGAAATAAGC CGTAGGTTTA TGGAGGCTGT GCCACCCGAG 
AAATACCTCG AAGTACACCT AAAGCTAATT CAATTCGGCC GCGACATATG CACAGCAAGG 
GCCCCCAAAT GCCATATATG TCCTATTGGA AGCAAGTGCC CGTCTTACAC ACGTCGCTAG
 
Protein sequence
MDLGEFIDAV DKTVELRLNE FIAPVVWRRG GNLFEMAVAV VLSQNTSDRN AFKAYDQLKR 
RLGEITPEAV LQLSEDELAE LIKPAGMYRI RARNIRALAD AFIRHKVTPE KLREMGPVEA 
RKFLLSLPGV GEKTADVILV NLGLPAFPVD THIRRIAKRW GIVGNHGEIS RRFMEAVPPE 
KYLEVHLKLI QFGRDICTAR APKCHICPIG SKCPSYTRR