| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0054 |
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| Symbol | |
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| ID | 4910203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 54370 |
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| End bp | 55371 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640123807 |
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| Product | H/ACA RNA-protein complex component Cbf5p |
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| Protein accession | YP_001054960 |
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| Protein GI | 126458682 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase
[TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTGCG GCAGTAGGGA GGTTTTTGTA AAACTGGAGG AGGGGACGAA TCCGCAGTGG
GGCAAACCGC CGTCGAGTAG AAGCGCAGAG GAGCACATAC GGTACTCTTT TCTCATTTTA
GACAAGCCCA GGGGGCCGAC TAGCCACGAG GTTGCGGCGT GGGTGAAGAA GATTTTGGGA
GTGGAGAGGG CTGGGCACTC GGGCACTCTG GACCCGAAGG TGTCCGGTGT CCTTCCAGTG
GCCGTGGCTG AGGGGACTAA GGTGCTTATG GCTTTGTCTA GGGCGGACAA GGTCTACATA
GCCGTGGCCA AGTTCCACGG CGATGTAGAC GTAGAAAATC TGCGGAGGGT GTTGCAGGAG
CTTCAGGGGG AGATCTACCA GAAGCCCCCG CTCCGCTCCG CGGTGAAGAG GCAACTTAGA
ACGCGCCGGG TTTACTCCCT GGAGCTTTTG GAGCTTGACG GGAGGTACGC AGTGCTGAAA
ATGCACGTGG AGGCCGGCAC CTATGCTAGA AAGCTTATCC ACGACTTGGG GGAAATCTTG
GGGGTTGGGG CAAATATGAG GGAGCTCCGC CGCGTGGCGG TCTCGTGTTT TACAGAGGAC
GAGGCCGTGA CTCTGCAGGA CTTGGCAGAC GCGTACTACA TTTGGAAGAA GTACGGCGAT
GATACATATC TCAGGAGGGT GTTGCTCCCA ATAGAGGAGA TAGCGAGACC TCTGCCCAAG
ATCTGGGTCC GCGACAGCGC CGTTGACGCC CTCTGCAACG GCGCCCCCCT CGCTGCACCC
GGCGTGGCCA AGTTTGAACA CCCGTTTAGC CGCGGCGACT TAGTGGCCTA TTTTACGCTT
AAGGGCGAGC TCATAGGCAT TGGAAGAGCG CTTGTCGACA GTGAGGAGGT TAAGAAAATG
GAGAAGGGGC TTGTGGCGCG GACCGACCGG GTGGTCATGC CCCGCGGCAC CTATCCGCCC
ATGTGGAGGC GAGGCGGTAA AAGCTTTAAA AGTGGCACCT AG
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| Protein sequence | MKCGSREVFV KLEEGTNPQW GKPPSSRSAE EHIRYSFLIL DKPRGPTSHE VAAWVKKILG
VERAGHSGTL DPKVSGVLPV AVAEGTKVLM ALSRADKVYI AVAKFHGDVD VENLRRVLQE
LQGEIYQKPP LRSAVKRQLR TRRVYSLELL ELDGRYAVLK MHVEAGTYAR KLIHDLGEIL
GVGANMRELR RVAVSCFTED EAVTLQDLAD AYYIWKKYGD DTYLRRVLLP IEEIARPLPK
IWVRDSAVDA LCNGAPLAAP GVAKFEHPFS RGDLVAYFTL KGELIGIGRA LVDSEEVKKM
EKGLVARTDR VVMPRGTYPP MWRRGGKSFK SGT
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