| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0017 |
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| Symbol | |
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| ID | 4908637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 11209 |
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| End bp | 12267 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640123770 |
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| Product | isopentenyl pyrophosphate isomerase |
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| Protein accession | YP_001054923 |
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| Protein GI | 126458645 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
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| TIGRFAM ID | [TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGAAGA GAAAGGACGA CCACATCCAC TTAGCTTATT CTGACGTTTC TCAAGTAGGC
TCGCCTTGGT TTGACGAGGT TCTCCTCATC CACAACGCTC TGCCCGAGCT TGACTTGGCG
GATGTAGACC TCTCGGCGGA TTTCCTGGGG GCTAAGGTGA GCGCGCCTTT TGGCATCGGT
GCAATGACTG GAGGCACAGA GCTCGCCGGT AAAATTAACG CAGAGCTCGC CAAGGCAGCT
GAGGAGTTTG GCATCCCGAT GTATGTCGGC TCTCAACGTG TTGCGTTGCA AAATCCCTCA
GTTAGGTGGA CTTTTGAGGT GGTAAAACAA CACGCCCCCA CTATCCCCAA GGTGGCCAAC
TTGGGCGCTC CCCAGCTTTC TGCGTTGCCT GAGGAGAAGG TGGTGGAGTG GGTTGTGGAG
GCTGTGGAGA TGATTGACGC CTATGCTGTA GCGATTCATC TAAACGCCGC GCAGGAGGTG
GTTCAGCCCG AGGGGGAGCC GCGGTTCCGC GGCGTGTTGG AGAAAATCAA GCTTGTCAAG
AGGGCGGTGG GGAAGCCCGT TATTGTGAAA GAGGTGGGCA ATGGAATATC TAAAGAAGTG
GCGGAGCGCC TCGCTGGAGT TGTAGATGCC ATAGACGTGG GCGGGCTGGG CGGCACCTCG
TTTGTGTCTA TTGAGGGGGC TAGGGCGCTG GGGGCTGGCC TAGAGCTGTA TAGGCGTATT
TCCGAGGTTT TTAAGACGTG GGGTATACCC ACTGCGGCCT CTATATGTGA GGTTAGGTCT
GTCTTTGGGG GGTATGTGAT AGCCTCTGGC GGAGTTAGAA GCGGACTTGA TGGGGCAAGG
GCTCTGGCTC TTGGGGCGAA CTTTTTTACA ATGTCTCAGC CTCTGCTAAG AGCTGTCTTA
GATGGGAGAA TTAGGGAGGA GATCAGCGCC GTCTTGACGG AGCTCAAGGT TGCTATGTTT
TTGGTGGGCG CTAGGCGGGT CTCCGACTTG GCCAAGGTCC CCAGGGTGTA TGGCCCTAGG
CTGAGGGAGT GGATTGAGCA GAGAGGCCTC CGTTGTTAG
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| Protein sequence | MEKRKDDHIH LAYSDVSQVG SPWFDEVLLI HNALPELDLA DVDLSADFLG AKVSAPFGIG
AMTGGTELAG KINAELAKAA EEFGIPMYVG SQRVALQNPS VRWTFEVVKQ HAPTIPKVAN
LGAPQLSALP EEKVVEWVVE AVEMIDAYAV AIHLNAAQEV VQPEGEPRFR GVLEKIKLVK
RAVGKPVIVK EVGNGISKEV AERLAGVVDA IDVGGLGGTS FVSIEGARAL GAGLELYRRI
SEVFKTWGIP TAASICEVRS VFGGYVIASG GVRSGLDGAR ALALGANFFT MSQPLLRAVL
DGRIREEISA VLTELKVAMF LVGARRVSDL AKVPRVYGPR LREWIEQRGL RC
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