| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0011 |
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| Symbol | |
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| ID | 4908536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 6661 |
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| End bp | 7044 |
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| Gene Length | 384 bp |
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| Protein Length | 127 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640123764 |
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| Product | cytidine deaminase |
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| Protein accession | YP_001054917 |
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| Protein GI | 126458639 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0295] Cytidine deaminase |
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| TIGRFAM ID | [TIGR01354] cytidine deaminase, homotetrameric |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACGAGT TAGTAGAGGC GGCGAAGGCT GTTTTAAACA ACGCCTATGC GCCCTACTCC
AAGTTTAAGG TGGCTGCGGC CGTGAAGACT AGGAGTGGGA AAGTTTATAC AGGCGTAAAT
GTAGAAAATG CATCGTACGG CCTCACCGTG TGTGCAGAGC GTGTCGCAAT ATTTAAGGCA
GTCTCTGAGG GCGATAGAGA CATAGAAGTT GTGGCGGTGT ATGTAGACGC AGACGAGCCC
GTGGCCCCTT GTGGCGCGTG TAGGCAGGTA ATAGCCGAAT TTAATCCAAA CGCCCTAGTG
GTAATGGCCA GCCGCAACAA GGTCAAAACA GCGAGACTTA GCGAATTACT GCCAATGGCG
TTCACAGGAG AACGCCTGCG GTAG
|
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| Protein sequence | MDELVEAAKA VLNNAYAPYS KFKVAAAVKT RSGKVYTGVN VENASYGLTV CAERVAIFKA
VSEGDRDIEV VAVYVDADEP VAPCGACRQV IAEFNPNALV VMASRNKVKT ARLSELLPMA
FTGERLR
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