Gene Pcal_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0002 
Symbolcdc6 
ID4908934 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp379 
End bp1551 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content47% 
IMG OID640123755 
Productcell division control protein 6 
Protein accessionYP_001054908 
Protein GI126458630 
COG category[L] Replication, recombination and repair
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1474] Cdc6-related protein, AAA superfamily ATPase 
TIGRFAM ID[TIGR02928] orc1/cdc6 family replication initiation protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACATGG TCATAATTGA TGAGGCAGTC TTCTCCCCCA GCTATGTCCC AGAGAGACTT 
CCGCACAGAG AAGAACAGAT CCAGCAACTA GACGCCTTGT TCGGTGGGTG GCTCCGTAAT
CCTGGCCGTC ACTATCCGCG TGTGGTACTT CTAGGAAGAC CAGGCACAGG CAAAACTGCC
ACATTACGTA GATTTTGGTC TACTATAAAA AATGAGACAA ATGTAAAATT TGTTCATATA
AACTGCTTTA TATATAGAAA TTTTAGCACT ATTATAGGAG AAATTGCAAA GTCGTTAAAT
ATCCCGTTTC CGAGGAGGGG TCTCAGTAAA GACGAATTTC TCTCACTACT CATAGAACAT
CTACGCGAGA GAGACCTCTA CATATTCCTG GCATTGGATG ATGCCTTTAA TCTCTCCGCA
GACGTCTTGT CGACATTTAT AAGACTAGGC CAAGAGTCCG ACAGGCTTGG CGCATTTAGA
ATTGCGCTGG CAGTTGTTGG CCACAGCGAC AGTATGATCA ATAACTTAGA CCCTTCAACG
CGTGGGATTA TGGGCAAGTT TGTAATACGC TTTCCTCCCT ACACCAGGGA CCAGATATTT
GACATAATAC TGGAGAGGGC GCAGATGGGG CTTGCCCCTG GCGCTTACAG CGACGAGGTT
CTACAAATGA TAGCAGACTT AACTGGCGCA CAAAGCCCCC TAGACTCAAG CAAGGGGGAT
GCGAGACTTG CCATAGATAT ACTATACCGC TCGGCATATA TCGCCCAGCA ATCTGGGAGA
AGGCAAATAA CGCCTGAGGA CGTCAGGAGG GCAACCAAGG AGGTTCTCTT TGGAGTCTCG
GAGGAGGTGC TTAGAGGTCT TTCTCTACAT GAGAAGTTGT TCCTACTGGC GATAGTAAGA
GCTTTGAAAA GCACAAACAG CCCGTATGTT ACCTTTGGCG ATGTTGAAGA TATGTATAAG
ATGATATGTG AAGAATTTGA TGAGAAGCCG AGAGTGCATA CACAGCTATG GACATATCTA
AGCGATTTGA GAGATAAGGG GATCGTAGAG ACGCGGTTAA ACAAAAGAGG GGAGGGGGTG
CGGGGGCGTA CTACTCTTAT CTCCATAGGA TCGGAACCCC TGGATACGTT AGAGGCCGTT
GTTACGAAGC TTATTAGAGA GGAGCTACAA TGA
 
Protein sequence
MHMVIIDEAV FSPSYVPERL PHREEQIQQL DALFGGWLRN PGRHYPRVVL LGRPGTGKTA 
TLRRFWSTIK NETNVKFVHI NCFIYRNFST IIGEIAKSLN IPFPRRGLSK DEFLSLLIEH
LRERDLYIFL ALDDAFNLSA DVLSTFIRLG QESDRLGAFR IALAVVGHSD SMINNLDPST
RGIMGKFVIR FPPYTRDQIF DIILERAQMG LAPGAYSDEV LQMIADLTGA QSPLDSSKGD
ARLAIDILYR SAYIAQQSGR RQITPEDVRR ATKEVLFGVS EEVLRGLSLH EKLFLLAIVR
ALKSTNSPYV TFGDVEDMYK MICEEFDEKP RVHTQLWTYL SDLRDKGIVE TRLNKRGEGV
RGRTTLISIG SEPLDTLEAV VTKLIREELQ