| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_86905 |
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| Symbol | SEC18 |
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| ID | 4851917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 3176308 |
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| End bp | 3179065 |
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| Gene Length | 2758 bp |
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| Protein Length | 794 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640393625 |
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| Product | cytoplasmic protein involved in protein transport between ER and Golgi ATPase |
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| Protein accession | XP_001387178 |
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| Protein GI | 126276014 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0464] ATPases of the AAA+ class |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.900491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TACAATCACA ATCACAATCG GCTTAGCTAA GAATAGGAAA GTGTTGTGAC TTTGTATTAG
AAGACTTCCG TGCATTTTTC CCTTCCACAA CCAGAATTCA CTATGGAAAG ACTTGGATTC
CGTAGAGTCT CCAACAGCCC CACACAGCCT GGGGCCCCTA CCATCACCCA CCTGAGGCCC
AATGTTGCCA CCTCGGGTCC GGTTTCAAAC GCCGGCGTAC CTCACTTCAA GAAGAGCTTT
GTAGTCGACC AGTCTCCTGA CAATCGGATC GTTTCATCGA ACTGTGTTGC AGTAAATCCT
GGCGACTTTG CCAGTTTTCC CAATAGAACT CCATTTCTGT TTGACGCGGA GTTTGTGTAT
TCGATCGAGA AAGACGAACG CATGGCCCCT GGTTCTGTTG GGATGGGTGG GAACATTCGA
ACATGGGGCT CCTGGTCCAG AGGTCAGCTG ATAACTGTAG AATCGTATAA TATCTTTGCC
AACGGCAATA CCCAGCAGTC GTACTTGGGC CAAGTCGAAA TTCTCATAGA CTTCAAACAA
AAGAGTAAAG CCAGCTCTGC TGCAATCGTT CATGACGAAC TTGTGGACAT ATTTTTGAAG
AGCTATGAAA ACCAGATCTT GCAACCAACG CAGAAAATCA TCATGGACTT CAAGGGTGTC
TACTATGAGT TGTATATTTC ATCTGTACAG GTGATCGATA TTAGTAACAA CGATCACTTA
CCTTCGATTA AAGACCTGAC TGATTTGGCT TCAAAAGGCA TCTTGCTCCG TCAAACCGAT
GTCATTTTCT ATCCTGAGGA CAAGTCGCTC ATCAACTTGG TCAAACCTAC TTCTTTGAAA
CAGAAGATTC TTGGAGGTTC CACGCACCAC AAGCCACGTG CCCGCAAGCA GCTTATCAAC
TCCGACTTCA AGCTCGAGGA TTTGGGCATT GGTGGTTTGG ATGCCGAGTT CCAGGACATC
TTCAGAAGAG CATTCAACAG TAGAATATTG CCTCCAGAGA TCGCTGAGAA GTTGGACTAC
AAGCACTGTA AGGGTTTGTT ACTCTTCGGA CCTCCAGGAA CAGGAAAAAC GCTTATAGCT
CGTAAGTTGA GTAAAATGTT GAATGGTAGA GAACCCAAGA TCGTCAACGG GCCGGAGATG
TTGAGTAAAT ACGTGGGGGC ATCTGAAGAA AACATCCGTA ATTTGTTTAA GGATGCCGAA
CAGGAGTACA AACAAAAGGG CGAAGATTCC GACTTGCACG TTATAATTTT TGACGAGTTG
GATTCTGTTT TCAAGCAGAG AGGCTCAGGT AAATCCGACG GAACTGGTGT AGGCGACAAT
GTAGTCAACC AATTGTTGTC CAAAATGGAT GGTGTAGATC AATTGAATAA CATCTTGGTG
ATCGGTATGA CGAATAGGTT GGACTTAATC GATACGGCCT TGTTGAGACC AGGCAGATTT
GAGATCCAGA TCGAAATCTC GTTGCCAGAC GAAAAGGGTA GAAGAGATAT CTTGTTGATT
CACACGGCCA AGTTGCGAGA AAATGATTTG TTGACCTCAG ATATCGACTT TGACGAACTT
TCTTCGCTCA CAAAGAACTT CACTGGTGCC GAGTTGGAAG GTTTGTGCAA TTCCGCCAAG
TCTTTCGCAA TCACCAGACA CGTGAAGTCT GGCTCTATAG CTCAGATCGA CGTAGACTCG
ATCAGAAACT TAAAGATTAC TCGTAATGAC TTCTTGCTAG CATTGAGCGA AGTCAAGCCG
GCTTTCGGTA CAGATGAGGA GGACTTGACT CTCGCTGCTA GACACGGTAT CATCCAGTTC
AGCCACTTCA TCAAGAACAT CTTCGAGACT GGCCAGTCTA TCATTGACTT GGTCAAGTCC
AGCGAAACTG AAACTTTACG TAGTCTTTTG TTATATGGGC CACCTGGTGT AGGTAAAACA
GCCATAGCCA GTACTCTAGC TCTCAATTCT GATTTTCCTT TCATCAAGAT GTTGTCGGCT
GAGAGTTTGG CTGGTATGGG TGAGTTGCAG AAGATTCAGT ATATAGATAA CACCTTCAGA
GACGTCTACA AGTCGCCCTT GAACATCTTG CTCATCGACA AGATCGAGAC CTTGATCAAT
TACGTACCTA TTGGACCCAG GTTCTCCAAC GATATTCTCC AGTTGTTAAT GGTTTATTTA
ACCAAGAGTC CTCCAAAGGG CAGAAGATTG TTGATCATTG GTACTACTTC GCAATACTCA
GTGTTGAAGC ACATGAATTT GGTAGACTCG TTTAACGACG CTGTGGCTGT TCCACCAATC
AGAACGGTTG AAGAAATCGG CAAGGTATTG GATAAGTTGG GCTTCATGAG CGCTTCAGAG
AGACACGAGA TCTTGAACCA GTTGGGCAAG TTCGATGTCA ACATCGGCAT CAAGAGGTTA
ATCGACTCCA TCATGGTTTC GGCTTACGCT AAAGAAGGAG TCGATGATGT TGTTACGAAT
ATCATGGATA AAATGAGACT TGAATAGTTT GTTCGGTTTG CCTTTGCAAG AAATATATAT
AATACAGTGT ACGTTTCAAA AATATAATGA AGTTACATGA GACTTTAGTT GGCTTCTTTG
CTCTCTTAAT AGGCTTGACT TTTGGAAGTT CCCTTACTTG TGTATTATTC TTGATGTTTC
ATTGTTATCT TATCAATTCA AATGGAATGG CCAACAATTT AAATTCAGTG ATCGGAATAT
CATTAAGTAG GCTTGATCTA TAGTTTAGGT ATTTGACGTT TTTTTTATAT TTCCTTGG
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| Protein sequence | MERLGFRRVS NSPTQPGAPT ITHLRPNVAT SGPVSNAGVP HFKKSFVVDQ SPDNRIVSSN
CVAVNPGDFA SFPNRTPFLF DAEFVYSIEK DERMAPGSVG MGGNIRTWGS WSRGQLITVE
SYNIFANGNT QQSYLGQVEI LIDFKQKSKA SSAAIVHDEL VDIFLKSYEN QILQPTQKII
MDFKGVYYEL YISSVQVIDI SNNDHLPSIK DLTDLASKGI LLRQTDVIFY PEDKSLINLV
KPTSLKQKIL GGSTHHKPRA RKQLINSDFK LEDLGIGGLD AEFQDIFRRA FNSRILPPEI
AEKLDYKHCK GLLLFGPPGT GKTLIARKLS KMLNGREPKI VNGPEMLSKY VGASEENIRN
LFKDAEQEYK QKGEDSDLHV IIFDELDSVF KQRGSGKSDG TGVGDNVVNQ LLSKMDGVDQ
LNNILVIGMT NRLDLIDTAL LRPGRFEIQI EISLPDEKGR RDILLIHTAK LRENDLLTSD
IDFDELSSLT KNFTGAELEG LCNSAKSFAI TRHVKSGSIA QIDVDSIRNL KITRNDFLLA
LSEVKPAFGT DEEDLTLAAR HGIIQFSHFI KNIFETGQSI IDLVKSSETE TLRSLLLYGP
PGVGKTAIAS TLALNSDFPF IKMLSAESLA GMGELQKIQY IDNTFRDVYK SPLNILLIDK
IETLINYVPI GPRFSNDILQ LLMVYLTKSP PKGRRLLIIG TTSQYSVLKH MNLVDSFNDA
VAVPPIRTVE EIGKVLDKLG FMSASERHEI LNQLGKFDVN IGIKRLIDSI MVSAYAKEGV
DDVVTNIMDK MRLE
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