| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_86479 |
|---|
| Symbol | RSM22 |
|---|
| ID | 4851176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 1120283 |
|---|
| End bp | 1122828 |
|---|
| Gene Length | 2546 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | |
|---|
| GC content | 41% |
|---|
| IMG OID | 640392884 |
|---|
| Product | mitochondrial ribosome small subunit component |
|---|
| Protein accession | XP_001387443 |
|---|
| Protein GI | 126274162 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG5459] Predicted rRNA methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.161976 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.448427 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GATGTGCCCA CAGCAGAGGT GTCCATTTTC TTCATCGAAA TGTGGCCTCT TCCAATTTCA
AAGTGACAAT CAGTTTGCAA CTCATCAGAG CCATTTCAAG TAACCAGAAA AGCAAAGATT
CAGTACAAAC ATGGGACTCT TCAACTTTTG AGTTTCTAAA AGGCGATTCA GCTAGGGATA
ACAGTTCTGG TGTCAAGTTG CCGTTTGACG AAAGAAGAAA AAGTGAAACT TTTGGACAGC
TTGTGAGAAG TGAGATTCAT AAACGAGAAA ATAAGCTTGT AGAAGACAAC GAAAAGTTGG
TGAAGCAGGG ACCCACTTTC GCCGACAACG AAGAAAATGA TATTCCATTA GAAATGTCAC
CGTTTCGAAA TGCTGACGGC TCGTTTATCA AGGGTGAAAC CTCTGAAGAA GCACGACTCC
ATGATTTAAC TCTAGAGGGA AGAGTAGACA AGTCAACTAC TCAAATTCCA GATGAGATTG
CAAAGGCTAT AAATAACAAT ATTCTCAGAC TTAATATTCC TGACAAGTTG CGAGAAAGGG
CTGCGCAGAT TTATCAAAGC TTGAGCAGAG ACCAGATCCA GAAAGCTCCC CAGACCTCTT
TGGATTGCGA TGCCCACATC GCAGCACTTT TCTTGCAGGA CTATTCTCAT TCCAGGCAGG
TTCTCTTGGA GTTGCAGAAG AGAGTCGGAA AGGAAAAGTT CAATCCACAG CATATTTTGG
ATATTGGTTA TGGTCCTGCA ACTGGAATCG TCGCCTTGAA CGAGATCATG GGCCCAGAAT
GGGTTCCCCA GGAAAAGGAA GCATATATTA TTGGAAGAAA CAACCACCAG ATGAAAAAGA
GAGCCAAGAT CATTTTGTCC CGTCAGTTGA ACGAACACTT TGAAGTAGAA GCTGGTGCAA
ATTTTGCAGA AAACAACGAA CTTGAAGTCG AAGACGAAGA AGCGTTCATT GAAACTGAAA
TAAATGAACA AATTGAAGAA GAACAAGAAG AGGAAGAAGA TTATGTTGGA GCTATCGATA
CTTCTGCTAT TCTGTTGCGG ACGAGATTGA GAGATTCGCT ACCTGTTTCG AAATCGTATG
ATTTGATTAT GGTCAACCAT TCTCTTTTGA CGAGAGAGTT CAAGTTTCCC AAGGATATTG
ACGATAACAT CTATATGATC TTGAGATTAT TGAAGCCCGG AGGACACTTG GTTTTGGTTG
AAAGAGGCAA TGCCGTGGGA TTTGAGACTA TTGCTAGAGC CAGACAGATC ATGATCAGAC
CAGAGTCGTA TGCGAACGAA GTGGGTAAGA TCCCTCGTCC ATACATTAAG GGGTCCACCA
TAAAGCCACA AAGATTGAGA AAAGAAGATC AGATAATTTC AGATGAAGAT ATCGAATTTG
AACAGAAACT CTTGGAACAG TATGAACTAG AAAATCTTGA AGAATCCGAA GAAATTAAGT
TGAAACAGTT GGAAGAAGAA GTGGAAGTCC AAGACGCTTC CGAGTTTGAA AAAGAATTGA
ATGAAAAGTA CGGTGAACCC ACAGAAGAAG AACTCAAGTT TGAGTTTGAA GATAGTGACG
AATTTGAAGT TTTACCTGTA GACCATGAAC CCGCTATTTC TGGTACTGGT TCTGAATTGG
GTTCTGAAAG TGTGGACTAT CATATCAGCA TTCTTGCTCC ATGTCCACAT CACAGAAAGT
GTCCTTTACA GATTGGGGAT CCCAAATACT ACAAGATACC TAACCACAAA CATAGACTTA
ACTTCTGTTC GTTTAACAAA GTGGTGCAAA GACCAAGGTA CACTATGGAG TTGAAGAAAG
GACGTAGGTT GGCTACTACA TGGGATAAGA CTAGTGAAGA TGGGTTTGGG TTAGATCGAT
TATCAAAGAA AACCTTACAG AGTTTAGAAG GTTCAGGTAG ACCCGGCGGT GTCAATACAG
AGAACGGTTC GTACTCTTAC CTTATAGCTC AACGAAGTTT GAACGATGTT GAAACAATTA
AGAAGATCGA ATCAGATCGT CTGTATAACA ACTACGATGT TCAGAATAAG TTGGATGTCA
ACAACTGGGC CAGAATAATA CAGAAACCAG CCAAAATCAA GAAGAACGTT AAGTTAACCG
TTTGTTCAGC TGCTGGTAAC ATTGAAGTGT GGCAGATCCC TAAGAGTGTA GGTAAGCAAG
AGTATCACGA TGCTAGAAAA GTAGACCGTG GAGACACTTG GGCTCTTGGA AAGAAAAGTG
TTGTCATCAA GAATCTGATT ACAGACAAAA TACGTGACAA GCTAGACGTT CTTTCTAAAA
CTCAAAAGAA GACATTCCTT AAGGAACAGA GAAAGAAGCA ATGGAAGAAA AAGACCAGTG
CATCGGAAGA CGACTTCATG GATGACGTCT TCCTGATGAC AGACTCAATT GCAACCGAAT
TGGAGAATTC CAAAAAGTAC CAGGCAAAGG GACGTAGGGC CAACTATGAC GTTGATCCTC
GAAGCTTTGA TGGGAAGTGA TGAGCGATGA ATTGTATAAA GATGTAAATA AGTGTACATA
GTATAAAATA GAAGCTTGTA TAATGG
|
|---|
| Protein sequence | MSPFRNADGS FIKGETSEEA RLHDLTLEGR VDKSTTQIPD EIAKAINNNI LRLNIPDKLR
ERAAQIYQSL SRDQIQKAPQ TSLDCDAHIA ALFLQDYSHS RQVLLELQKR VGKEKFNPQH
ILDIGYGPAT GIVALNEIMG PEWVPQEKEA YIIGRNNHQM KKRAKIILSR QLNEHFEVEA
GANFAENNEL EVEDEEAFIE TEINEQIEEE QEEEEDYVGA IDTSAILLRT RLRDSLPVSK
SYDLIMVNHS LLTREFKFPK DIDDNIYMIL RLLKPGGHLV LVERGNAVGF ETIARARQIM
IRPESYANEV GKIPRPYIKG STIKPQRLRK EDQIISDEDI EFEQKLLEQY ELENLEESEE
IKLKQLEEEV EVQDASEFEK ELNEKYGEPT EEELKFEFED SDEFEVLPVD HEPAISGTGS
ELGSESVDYH ISILAPCPHH RKCPLQIGDP KYYKIPNHKH RLNFCSFNKV VQRPRYTMEL
KKGRRLATTW DKTSEDGFGL DRLSKKTLQS LEGSGRPGGV NTENGSYSYL IAQRSLNDVE
TIKKIESDRL YNNYDVQNKL DVNNWARIIQ KPAKIKKNVK LTVCSAAGNI EVWQIPKSVG
KQEYHDARKV DRGDTWALGK KSVVIKNLIT DKIRDKLDVL SKTQKKTFLK EQRKKQWKKK
TSASEDDFMD DVFLMTDSIA TELENSKKYQ AKGRRANYDV DPRSFDGK
|
|---|
| |