Gene PICST_81113 details

Gene Information

• Locus tag: PICST_81113
• Symbol: SEN1
• ID: 4851719
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Scheffersomyces stipitis CBS 6054
• Kingdom: Eukaryota
• Replicon accession: NC_009068
• Strand: +
• Start bp: 2645900
• End bp: 2652656
• Gene Length: 6757 bp
• Protein Length: 1999 aa
• GC content: 41%
• IMG OID: 640393427
• Product: DEAD-box type RNA helicase
• Protein accession: XP_001386840
• Protein GI: 126275384
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1112] Superfamily I DNA and RNA helicases and helicase subunits

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGTCGC TGTACATCCC CAAACCGGAA GAGTTCGATG CGCTCGTAGC ATCTATCCAA 
CAGTCCCACC ACGAGCCAGG AAACAGTTCA AACCAGGAGG TTGTGCTTAA AAAATGTATA 
ACCTACCTCT TCCGCTACGG GCAGAAGGAC ACCCACTTGT TCTGTGATCC CTCCATGTAT 
CCCGTAACCG TCCATATTAT GATCTTGTTC TCATTTCCAA ATAATGGGGT GCTCGAAAAA 
TTGAAGCCCA TGCTAGCAGA TAGCTTGTGG AAGTGTGATA ATTGCTTGCG CTGTTTCAAT 
TTGGGGAAAT CGACTCTTAG AATCGACTTC GCTGCAAATA GACAGATCGA AATCTCCAAA 
GTCAACCAGT TCATTGGAGT CATTGTTCAA TGGGAAACGC AAGTATTTGG CCAGGAAATT 
CAAACAGTCG CTGCGGCACT CAAAGATGGG AAATTTCCTT CATTGACTAG CAGTTCACCT 
ATAGACTTTG CTATCAGAGC GTGTTTATAT GGCCCACAGA TTCTACGCAA TAATACTGGC 
GTGAGAGATG ATTTCATGAC AATTATATCC AACATCCAGG CTGGTACCTT GTCCTACCCA 
TATCCTGAAT TACTCCTACC GGGCGCTTTC TATCTCCTCT TCGAGGGTCA AACTCAACAG 
AAGCTGTGGG CTGCTCAATG GCTCCAGTAT CTTAAAGAAA AGCAGTATCA GCTTACCGCA 
ACTACCGTAC TGCCTACTTT GGTGGATGAG TTCAGCGTCC ATTTGTATAG AATCCAGGAC 
GCCAACTTTT TCTCGCCACA TGCCTCCATT GACTTCTGGA CAGTTGTACA CCTGCTTCTT 
GAACTTGTAG ATAATGAAGC ATTCATGAAC CACTTCAACG TTCCGCCAGA TATTAATCTC 
ATGCGACAGT ATACAAAATT AAGGCTTTAT CCTATATTAA GACTCTTCAT GAATAACCTC 
TTGGCCAACT TGAAGGATAC CCTACCCATA CTTCTCAAGG TGCTTCTGAA GTTGTTGGCG 
AAGTACCACA CGGCTTTCTG GGGAATCGTA GCACCTATTA CGTACTCACA AGTGTTGGAT 
TCCATTTTGG TCAACCCAGA GTTTAACCGA TTACTCTTTG CTTCAGCCGT GGAGGAGCCA 
GAGAATTCGA AGATAGATGA TTCTGTTCAA AGTAATATCC TTCTGTGGAT TTACCCATTC 
CTTTATTCGT TGAATGAAAC AAATAACCAG ACATCGTCGA GAAAGTTAGC CAACTACTTA 
CTCAAACAAG TGGCATCCAT TACTGATACC TCTATATTAT CTGAACGTTT AAAGAAAGAA 
TTGCTAGACA ACTATGCGTT GCGTATTCTT CTGCTTTCTT TTCAGTTCAA CGTTACAAGC 
TGTGATTTTG GTAGTAAGAA TTATGAACTC AGTCTTCTCA AGATCAGGGA TACTAGGGCT 
ACTATAGAAA ACAATGCGGC TATTATAGTT TCCAATGCCT ATTCTCTGTC TAAAATTGCA 
AGAAGGTTAA TATTCACAGC TCTTTCATAT GATGTGGCTC TATTAGCGCA CTCTACCAGT 
TTGCTAATGG CTGGTAATAT TCCTACATCC TTCGATTCGT TCCCGTTGCT TTGGGATGCA 
CTCAACAAGT CTTCGACCTT CTCTGTCAAT ATCGGCACTA CAAAGTTGCT TGGTTCATTG 
TCTAAAGTAA ATTCCGTAGT AAAATTCTCC AAGAGAAAAA ACGAAGTGCT TCCAAAGCAG 
ATGGCCGAAG CTCGGGCTCA ACATAATGAG AATGTAACAC TGATATTCAC TACTCTATCC 
TCATGTCTAG CTAAGGTGAG TTTGTCAAAT CCATCAGAGT TGAAAAAGGT ATTTCTGGAA 
GAACTGATCC AAATTGCCTT TTGGTCTTGT CTCTTTTCTC CTTTAATTAC AGAATCGGCT 
ACTGATGTCT TATACCAAGT CTTTGACGAC GTTGTTGGTC GTTACGAGGC CTTCCAGGGT 
TTACTAGAAA CCCATTTACA AATAACCGTC AATGCTATTG ACCAAAGTGT GCAGAGAATG 
ACTCAATTAG CTGCCTACGA ACCAAGCCCC AGAGCAATCA GAATACTAAT GGATGTTGTT 
AAAGGTTTGA CAGATCCATT GACCGGCATT CTATCATCAT CAGAACAGGT GCAAGGTTCG 
GGAGATTCCA TAGTAACTTT TTGGAGTACC TGTTGGTCCT TTTTGATCAT GGTGTATCAG 
AAGACCTTGA CATGGGCCAA CCAGTTTCAT CTTGAAGAGT TGATTGAGTT CACCAGGGAT 
ACTCTTGATC TTAGTCATTT TCTATTAGAC AATTTCAGAT TGGTCGCTGA TAGTATTCCT 
GGTTCGTCTG GAGAAAAACT GCATTCATTG TTCAGAAAGT TTATGAATGC TTTTCATTAC 
ATGATTGTTT GGCTCAGATT GGGGGATGCA TCTTTATTAA ATTCATGTGT AGAGTTGGTA 
TTCAAAGGGT TTGAATTGGC TAAAGATTTG GATTTCACCA TCGATGTCGC CTTTATAGAG 
ACCTTTGCAA AATTTGGAGC AAAGGCTAAG AAGTTTAACA ACAAATTGAC TGAACAGCAA 
CGTCTGGAAA TTCTTTCGAA GGCTAGAGAA TTTGACGAAG GCTTAGTAGA TAAGGTCATT 
ACAGAGACGG CTCTTCAGCG AGGAAAGGCA AAGAAAGACT CTGAAAGTGG CACTTCTACT 
CCAGAGCCAC CTGCTTTTGC ATATCAAAAT CAAGCCAAAC AACCTAGGCA ACAAACTCTT 
GGAAGATTTG GAGTCGTTAC CACAGAAGCT CCAGTGGCTC CAGCTCCGAA GGGCTTCAAG 
TCGTCCAGTT TGGATTCCAT TAGGAAAGAT CTAGTGAGTT CTCGTGCAAC TGTCAAACCT 
TCTGTCATTC CTGCCGTCAA CCCTGCTCCC CCTAGACCAG CAGGATTCAA TTCTAAGAAG 
CAGCCAGCTG TGGGAAGATC TTTGAATCAA CTCAAGAAAA AGAGAGTGGA CTCGGATAGT 
TCTGAAGATG AATTAGACAC AGACACTTCT GACCTCTTCG TAGACAAATC GAAGAAGAAG 
GTTACTGTTA CTGAGATTGA TATGTACGGA AGACCTGTTG CAGGTAGACC TCAAAAATCT 
AAGGTAGATA TAGCCAAGAG AGAAGAAGAA AATATGAGAA ACAGATTGAA TGTATCACTC 
AAACCTCTCT ATAGTACAAT TTTGAAATGG AATTACAATT CTAACGACAG TTTTCCAACA 
GGCGATCGCG ATAGCTATAA GGAAATCAAA AGCCAATATG ATGATGTCAA AGATTATGTC 
AAGACGACAG AACCATTACT TATGTTGGAA TGTTGGCAGG GTATTCAATC GGCCAAACAA 
ACAGGTCAAG AGAAACCATT TGAAATACTT GTGGGAAGCA GGACTAGTGT AGATGGTTTC 
TTTGATGTTT ACGGTTCTGT CAAGAAGTCG GTGATAGCTG ATAGAAAAGT TGGTGATTCT 
GATTTGTTGG TGTTGGGATT TGTGCAAGAA GAATTCTCTA CACCTGAAGC CCTTGGGCAC 
TATTTGAAGG CTCCTACTAC TAGAACATGT TTAGCTAAGG TGAGGGAAAT CAAATCTGCA 
AATCCAGATT ATAATGACAT CACTGTTAGA GTGTACCCCA GCGGCTCTAT GATGGGCGTA 
TTGACTCCCA AATCACAGAT TGTAGCTATG AGAATCAGTC AGATGGTAAC CATTGAAAGA 
GAATATACTT CTTTGAAGGG TCTACAGTAC TACGATTTGT GTGATTCAAT TTTAGCAGCA 
AAACCCAATG AACCAGTCGA AATTTCAGAC GCCGAGGCTA TGAAGCTACT CAATATTTAC 
GATGTCAATA AGTCTCAAGC AAAGGCTATT ATAGGATCCT ACAATAGTGA AGGTTTTTCG 
TTGATCCAAG GCCCTCCCGG AACTGGTAAG ACCAAGACTA TTCTTGGTAT CGTAGGATAT 
TCCTTGTCAC AACAGGTTGA TGAGAAGATA ATTATCAAGA TTGACCAGGG CAATGGCAAT 
GTAATTCTGG GCAATGAGAA GAAACCTAAG GTTTTAATCT GTGCTCCAAG TAATGCTGCA 
GTAGATGAGT TGGTAGTACG TTTAAGAGAT GGAGTGCGAA ACTCGAGGGG GGAGCATATC 
ATTCCAAAGC TTGTACGTAT GGGTAGAAGT GATGCTATCA ATGCCGCCGT AAAGGATTTG 
ACATTGGAAG AATTAGTTGA AAAAGAGTTG CAAGCTAAAG CCATGAATAC TGATACTTCT 
ACTGATCCTA ATATCCGTGC TGAACATCTG AAATGTATAG AGGAAAGGGA CAATCTTAGA 
AGAAAGTTGC AGACTGACAG TTTGTCTTCT AAGGAAATTG ACGAGTTGGA AAGTGCCTTA 
CGCGAGATAA ATAAGAAGAG AACTGAATTA GGTAAACAGC TTGATTTACA GAGAGAAAGA 
GTTTCTATTG CATATCGTAC CAGAGAAATT GAAAGAAGAA ATGCCCAAGC TAAGATCTTG 
AATGATGCCC AAATTATCTG CTCGACGTTA TCTGGTTCTG CTCATGACTT TTTGGCTAAC 
ATGGGTATTA CATTTGATCA GGTAGTAATT GATGAAGCAT GTCAGTGTGT GGAGTTATCT 
TCTATTATTC CTTTGCGATA TGGTTGTAAG AAGTGTATTA TGGTTGGGGA TCCTAACCAA 
TTGCCTCCTA CCGTATTATC GCAAGCTGCT GCCTCTTTCA ATTACGAGCA AAGTTTGTTT 
GTTAGAATGC AGCAGAATAA TCCCAACTCT GTGTACTTGT TAGATGTTCA GTATCGTATG 
CATCCTCAAA TTTCTGCATT TCCCAGCGCA CAATTCTACC AATCTCGTTT GAAAGATGGT 
GAAGGAATGG CTGCAAAAAA CGAACGCCCG TGGCATTCTC AGTATCCTCT TTCGCCTTAT 
AGGTTTTTTG ACATTGTCAG TCGACATCAG AGAAATGAGC TCTCTCGATC TTTATTCAAT 
ACTGGTGAAG CTCGTGTTGC ATTAGAATTG GTAGAAAAGC TTATGACGCT ATTGCCTGAA 
GATCAGTTTA GTGGCCGCAT TGGAATTATA TCTCCTTATA AGGAACAGAT CAAGACTTTG 
AGAGATGTTT TCATAAAGAA GTACGGATAC TCTATCACTA CGCAGATTGA TTTCAACACG 
GTTGATGGAT TCCAAGGACA GGAAAAGGAA ATCATCATCA TGTCGTGTGT CCGTGCCAGT 
GACAATGGTA ATGTTGGTTT CTTGAGTGAT GTTCGTCGTA TGAACGTTGC CTTGACTCGT 
GCGAGAACAA CACTCTGGAT ATTGGGTAAT AAAGAATCGT TGATGAGAAA CAAGATTTGG 
AACAAGCTTC TCACAGATGC TACTGACAGA AATTGTGTCT CGCAAGCTTA TCCCGGTTTC 
TTGAGTAGTG CCAGTGAACA AGCTCCTGGA AAGAGAAAGG TTGTTGAAAA CAGACAGGGA 
AACGCAACGA AACGCTCAAA GCATATTAAG AATGAAGGAA CTGTCAAACC AGCACAAGAT 
AAAAGAAACA GTGCAAAGGC TAATCCTCAT TCTGGTCCAA AAAAGATTAA GAGTAGTATA 
TTTGGCAGCT CTAATCCAAC AACATCTGGG ATCCCAAATT CTGAGCCCGA ATTAATCCAG 
CTTGGAAATA AGCCAAAGAA ACCTGTCATC TACAACGCTG GAGGTACGAA GGGTATCAAT 
GGAAAAGCTA TTAGTGCATC TAAGTCCGGA GTTCTTCCTC CTCCAAGTAA TTCGAAAAAC 
GATACCAATA GCACTATCAA CAAAAACAAT ACCAGCCATG CAGAAATATC TTTGCCTCCT 
CGTCCTTCTA GTAGCGGTGT TTTGCCACAG AAACCCGCTC TGCAAATACC CAAGGCTAGG 
AGTGGAGTCA TCCCAGGACC AAAACCAAAC GGTGTTCAAC CTACAAAATC AGGAACGATT 
CGTCCTCCAA CCTCTGCTAT ATTTATTAGT CAAAGAAAGA AACCACCTCC AAAACGGTAG 
GTGCTTCAAT AAATACAATA TATACAATCA TTAAATATTA TCAACTTGTA GACACACGTT 
CTACTATTCG CTCTTACCTT GCTTCTTGTG TAAGCCAAAG AATTGCTTGC GTTCATCTTT 
AGGTATCGAT GGCTGCACCT TGGTACTTGC CGTAGCAGAT TCTGTACCCA CATTGACAAT 
CGCTGCCGTC TTGAAAGGAG GTGAGATTGA TTTAAGACCT TTCGGAACGG ATGCCTCGAT 
CTGATGTCCC GAAGCAACTC TCAAGCTATC TTCCGAGAAC CCTACCTCTT GGTACTGTAT 
CAAGTATTTC TCGTACGAAG CATTTGAAAA CATGCTGAGT GCTACTAGTA ACGCTCTCAA 
TTCATTTAGC ACTGCCTCGG AAAAGAGGTT GTCATTCACT GCTATGGCAG AATCACCATT 
AAAGGTAGAA TTGAAACTCT TCATCGACTC GAGACACGAT TTGATTTGTG TCAATGTCAA 
TGTCAACACG TTTGAAAGAT TACTACTCAA TTCTGACGAA ACAGACTCCT CGATCTGGTC 
CAGTAACTTG CTTTCTTGCA CCTTGAGAAT GGCAACTATA TCTTTCCAGA TTGTCCCGTA 
TTCATGGAAA ATAGTTGCTT TGTTTGAAGT CAAAAGAACA ATGTCACTAA GAGCACCGAC 
TTTATGCTCT AGAAGCTTCA ATACTGGTTC AAGCTCCAAC TTCTCGGATA CAGTGTTTGT 
GCTATCATCT ACGCTGGCTG TTGGGGGAAT GTCCAAT 

 

Protein sequence

MPSLYIPKPE EFDALVASIQ QSHHEPGNSS NQEVVLKKCI TYLFRYGQKD THLFCDPSMY 
PVTVHIMILF SFPNNGVLEK LKPMLADSLW KCDNCLRCFN LGKSTLRIDF AANRQIEISK 
VNQFIGVIVQ WETQVFGQEI QTVAAALKDG KFPSLTSSSP IDFAIRACLY GPQILRNNTG 
VRDDFMTIIS NIQAGTLSYP YPELLLPGAF YLLFEGQTQQ KLWAAQWLQY LKEKQYQLTA 
TTVLPTLVDE FSVHLYRIQD ANFFSPHASI DFWTVVHLLL ELVDNEAFMN HFNVPPDINL 
MRQYTKLRLY PILRLFMNNL LANLKDTLPI LLKVLLKLLA KYHTAFWGIV APITYSQVLD 
SILVNPEFNR LLFASAVEEP ENSKIDDSVQ SNILLWIYPF LYSLNETNNQ TSSRKLANYL 
LKQVASITDT SILSERLKKE LLDNYALRIL LLSFQFNVTS CDFGSKNYEL SLLKIRDTRA 
TIENNAAIIV SNAYSLSKIA RRLIFTALSY DVALLAHSTS LLMAGNIPTS FDSFPLLWDA 
LNKSSTFSVN IGTTKLLGSL SKVNSVVKFS KRKNEVLPKQ MAEARAQHNE NVTLIFTTLS 
SCLAKVSLSN PSELKKVFLE ELIQIAFWSC LFSPLITESA TDVLYQVFDD VVGRYEAFQG 
LLETHLQITV NAIDQSVQRM TQLAAYEPSP RAIRILMDVV KGLTDPLTGI LSSSEQVQGS 
GDSIVTFWST CWSFLIMVYQ KTLTWANQFH LEELIEFTRD TLDLSHFLLD NFRLVADSIP 
GSSGEKLHSL FRKFMNAFHY MIVWLRLGDA SLLNSCVELV FKGFELAKDL DFTIDVAFIE 
TFAKFGAKAK KFNNKLTEQQ RLEILSKARE FDEGLVDKVI TETALQRGKA KKDSESGTST 
PEPPAFAYQN QAKQPRQQTL GRFGVVTTEA PVAPAPKGFK SSSLDSIRKD LVSSRATVKP 
SVIPAVNPAP PRPAGFNSKK QPAVGRSLNQ LKKKRVDSDS SEDELDTDTS DLFVDKSKKK 
VTVTEIDMYG RPVAGRPQKS KVDIAKREEE NMRNRLNVSL KPLYSTILKW NYNSNDSFPT 
GDRDSYKEIK SQYDDVKDYV KTTEPLLMLE CWQGIQSAKQ TGQEKPFEIL VGSRTSVDGF 
FDVYGSVKKS VIADRKVGDS DLLVLGFVQE EFSTPEALGH YLKAPTTRTC LAKVREIKSA 
NPDYNDITVR VYPSGSMMGV LTPKSQIVAM RISQMVTIER EYTSLKGLQY YDLCDSILAA 
KPNEPVEISD AEAMKLLNIY DVNKSQAKAI IGSYNSEGFS LIQGPPGTGK TKTILGIVGY 
SLSQQVDEKI IIKIDQGNGN VILGNEKKPK VLICAPSNAA VDELVVRLRD GVRNSRGEHI 
IPKLVRMGRS DAINAAVKDL TLEELVEKEL QAKAMNTDTS TDPNIRAEHL KCIEERDNLR 
RKLQTDSLSS KEIDELESAL REINKKRTEL GKQLDLQRER VSIAYRTREI ERRNAQAKIL 
NDAQIICSTL SGSAHDFLAN MGITFDQVVI DEACQCVELS SIIPLRYGCK KCIMVGDPNQ 
LPPTVLSQAA ASFNYEQSLF VRMQQNNPNS VYLLDVQYRM HPQISAFPSA QFYQSRLKDG 
EGMAAKNERP WHSQYPLSPY RFFDIVSRHQ RNELSRSLFN TGEARVALEL VEKLMTLLPE 
DQFSGRIGII SPYKEQIKTL RDVFIKKYGY SITTQIDFNT VDGFQGQEKE IIIMSCVRAS 
DNGNVGFLSD VRRMNVALTR ARTTLWILGN KESLMRNKIW NKLLTDATDR NCVSQAYPGF 
LSSASEQAPG KRKVVENRQG NATKRSKHIK NEGTVKPAQD KRNSAKANPH SGPKKIKSSI 
FGSSNPTTSG IPNSEPELIQ LGNKPKKPVI YNAGGTKGIN GKAISASKSG VLPPPSNSKN 
DTNSTINKNN TSHAEISLPP RPSSSGVLPQ KPALQIPKAR SGVIPGPKPN GVQPTKSGTI 
RPPTSAIFIS QRKKPPPKR