| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_81035 |
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| Symbol | RPD3 |
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| ID | 4851778 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 2803440 |
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| End bp | 2805428 |
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| Gene Length | 1989 bp |
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| Protein Length | 500 aa |
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| Translation table | |
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| GC content | 46% |
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| IMG OID | 640393486 |
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| Product | histone deacetylase transcription modifier |
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| Protein accession | XP_001386874 |
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| Protein GI | 126275574 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.773072 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ACAGGGTCCA ACTGCTGTGG GGAATACTAC TCATAGACGA CCTCTCGAAA CCAAACACCG
ACGCGTCCGT TTCAGAGGCT GAATTGACCC AGTTTGTATA CTGATAGAGC CGCCAGTCAT
TTTGTACCAG AAGCCATACT AGATAGCCTA CAGGCTCTAC CGAAGCATAC AGAAAACCAA
CTAAAAAAAG CTAAAACTTC AAAATCAATT CAAATTTACA AGCAGATTAC AACTGCCATT
TCAGATCCAC GAAATACTCG TACTTTCAAA AAAATTTCAC ATTAACTACT AGCGATGTAC
GTACAGCTTC CATTTGATGA GCTCAAGGTA GATCCGACAC AGAAGAAGCG GATTGCTTAC
TTCTACGATG CCGATATCGG CAACTACGCC TACGGAGCCG GCCATCCCAT GAAACCCCAT
AGAATAAGAA TGGCCCACTC GTTGATCATG AACTATGGCT TATATAAGAA GATGGAAATC
TACCGAGCCA AGCCAGCCAC AAAGCAGGAG ATGTGTCAGT TCCATACTGA TGAGTATATC
GACTTCTTGA GTCGTGTGGG ACCTGACAAC TTGGACATGT TTGCTAAAGA ACAGATCAAG
TTTAACGTTG GTGATGACTG TCCTGTTTTT GATGGGTTGT TTGAATACTG TGGTATCTCG
GGAGGTGGAT CCATGGAAGG TGCTGCTCGG TTGAACCGAG GTAAGTGTGA TATTGCTATC
AACTACGCTG GGGGATTGCA CCACGCGAAG AAGTCCGAGG CTTCAGGCTT CTGTTACTTG
AACGATATCG TTTTGGGTAT TATCGAGTTG TTGCGCTACC ATCCTAGAGT ATTGTACATC
GATATTGATG TCCACCACGG TGATGGAGTC GAGGAAGCAT TCTATACTAC TGACAGAGTG
ATGACAGCTT CGTTCCACAA GTACGGTGAG TTTTTCCCCG GAACTGGTGA ACTTAGAGAT
ATTGGAGTAG GCAAGGGTAA GTACTATAGT GTCAATGTTC CGTTGAGAGA TGGGATTGAT
GATGCAACGT ATAAGTCTGT GTTCGAGCCC TTGATCAGCA AGATCATCGA GTGGTACCAG
CCCTCGGCCA TTGTGTTGCA GTGTGGTGGA GATTCATTGA GTGGGGACAG ATTGGGCTGT
TTCAACTTGT CGATGGCTGG CCATGCCAAC TGTATCAACT TTGTCAAGTC GTTCAACATT
CCCATGATGG TTGTAGGAGG TGGAGGTTAT ACTATGAGAA ATGTAGCCAG AACTTGGGCT
TTCGAGTCGG GTTTGTTGAA CAACGTGATA TTGCCCTCGG AATTGCCTTA TAACGAATAC
TACGAATACT ATGGTCCTGA CTACAAGCTT GACGTCAGAC CTTCGAACAT GTACAACACC
AATTCGCCCG AGTTTTTGAA CAAGATCTTG ACCAGCATCA TCACCAACTT GGAGAATACC
AAACACGCAC CATCGGTGCA GATGAACGAA GTTCCTAGAG ACGCCGAGGA TCTTGGAGAC
GTTGATGAGG ACACCAAAGA AGCCATAGAC ACCAAGGGTG GATCGCAGCA GGCCAGAGAT
GAACAAATAC AGCCAGAGAA TGAATTCTAC GACGAGGATG ACAAGGATGA GGGCGAAAAG
ATGATTGTGG ACAACAGCGA ATCTAATGGC TCAGAGACTA CTGGAGCAAC TGTAGCTCCT
TCCACTAATA ATATCGAGAC TCAGGCTCCA GTAGAAGCTG CAAAGGAAGT TGAAGTAGAG
TCCAAAGCTG AAGTAGAAAC TCCAGCAGTA ACAACTACAG TAGCAGAAAT CCCAGCTGCA
GTTGAAACTG AAGTTAAGTC GGTTCCAGAT GCTTCTATTG AAGTCAAAGA AAAGCCAATC
GAAAGGGCTC CTGCTGAAGA AGCCAAAGAT GTCGAAGATG CCAAAGATGC CAAAGATGTT
CCATCCGCTT CCGTGTTGAC CAAGGAAGAG TTGGACGAGA TCGAAGAGTT GAACAAGGGT
GTAAATTAG
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| Protein sequence | MYVQLPFDEL KVDPTQKKRI AYFYDADIGN YAYGAGHPMK PHRIRMAHSL IMNYGLYKKM
EIYRAKPATK QEMCQFHTDE YIDFLSRVGP DNLDMFAKEQ IKFNVGDDCP VFDGLFEYCG
ISGGGSMEGA ARLNRGKCDI AINYAGGLHH AKKSEASGFC YLNDIVLGII ELLRYHPRVL
YIDIDVHHGD GVEEAFYTTD RVMTASFHKY GEFFPGTGEL RDIGVGKGKY YSVNVPLRDG
IDDATYKSVF EPLISKIIEW YQPSAIVLQC GGDSLSGDRL GCFNLSMAGH ANCINFVKSF
NIPMMVVGGG GYTMRNVART WAFESGLLNN VILPSELPYN EYYEYYGPDY KLDVRPSNMY
NTNSPEFLNK ILTSIITNLE NTKHAPSVQM NEVPRDAEDL GDVDEDTKEA IDTKGGSQQA
RDEQIQPENE FYDEDDKDEG EKMISVPDAS IEVKEKPIER APAEEAKDVE DAKDAKDVPS
ASVLTKEELD EIEELNKGVN
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