| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_80641 |
|---|
| Symbol | |
|---|
| ID | 4851404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 1728821 |
|---|
| End bp | 1731226 |
|---|
| Gene Length | 2406 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | |
|---|
| GC content | 44% |
|---|
| IMG OID | 640393112 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001387971 |
|---|
| Protein GI | 126274512 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5373] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATTGCCCATC AATTGTACCT AAAAGCCTGT TTTCAATCCG GTAATACGCT CCTGTCTTTC
TCTAGGGTGC ATTGACCTCA TTATCCACTC TGTCATCGTT TGATTTACCA GATCATCATT
TTCATATTTA GATCAAAGTA CTAAACTGAG ATCTTATATT ACTGAAAATT ACAACTACAG
TCTCAAAGTT ATCAATTGCT TAGTCTATAC TGCTATAGTC TATCATTGCA GAGATATCAC
ATTGAACTAT ATCTTTTATC ATTGAGTCTA CTTGGTCTGA GTTAGTCTTT CAATAATTCG
ATATCAATAC TCACTTCGTC TTCAGTCTTT CACTTTATCA CTAAGTCTAT TAGTTAAAAT
TTAAGATGGA AAAAATCGAC TTATCTTCCA ACTCCAGAAA GATCCAAGAC GCCTACGATA
AACTCGTACG TGGTGATCCT TCTGTCAACT ACGTCGTCTA CTCTGTCGAT GCCAGTCTGA
CTCTTGAAGT CTCACAAACT GGAAATGGAT CACTTGAAGA ATTCGTAGAG AATTTCAGTG
ACGGTCGTAT CCAGTTTGGT TTGGCCAGAG TCACCGTTCC AGGCTCGGAT GTTTCCAAGA
ACATCTTGCT AGGCTGGTGT CCAGACAATG CTCCTTCCAA GTCGAGATTG TCGTTTGCTT
CTAACTTTGC AGAGGTTTCC AAAGTCTTGA GTGGCTACCA TGTTCAAATT ACTGCTAGAG
ACCAGGATGA TTTGGACATC GACGACTTTG TCCAGAGAGT CCGTGCTGCT GCCGGAGCCT
CTTATTCACT CAACACTGGA ACTGTCAAAG CCGCTGCTGC TCCTGTTCCT AAACCTGTTG
TAGTCAAACC AATCGTAGCC AAGCCTTCCA AGCCTGCTAG TGTCAGTGGA ACATCTTTCA
TTCCAAAGTC AACTGGTAAG CCTGTGGCAC CTGTCAAACC GAAGCCCGTA TTGCCTGCTC
CTAAAGCCTT TGGCCAGCCA AAGCCCGTAG CTTCTTCCAA CGACGGCTGG GGCGATGCCC
AGGATGTCGA AGAAAGAGAC CTCGACTCCA AACCTTTAGA GGATGTTCCT TCGGCCTACA
AGCCTACGAA AGTTAACATC TCGGAATTGA GATCTCAGAA ATCTGACACT ATTTCTTCGA
CTCCAAAGCC ATTTAAGGCT GAGCCAAAGC CAGCTGAAAA GGATGACGAC AATGAGCCAA
AGTCTTTATC TGATAGAATG AAGACGTACA AGTCGTTTGA ACCTTCTTCC GACGGAAGAT
TGACAAGTTT GCCAAAACCA AAGGTATCTC ACTCGGTCAA TACTCGTTAT AAGCTGGAAG
CTCCTTCTTT CGGTGCTAAG CCTACTTTCG GTCAATCTGA CGACTCCAGA AAGGACAAAG
TCGTTGGTGG ATTATCCAGA AACTTTGCTG CTGAAAACGG CAAGACTCCA GCGCAAATTT
GGGCTGAGAA GAGGGGCCAG TACAAAACTG TAGAAGCTGG GGAATCGGAA TCGGGCGAAG
TCCATGCTCA CAGCTCTGAT TTGGCTCATA AGTTCGAGGA ACAAGTCAAA TTGCACGAAC
AGGAAGAAGA GGAAGAATTG GCTAAGCAAC ATGAACCTGT AGTTATTAAG CCTTCTACCT
TCCCCAAGAA GCAATTTGAT GAACCAGAGG AAGAAGAGGA AGAAGAGGAG GAGGAAGAAA
AGCCTACTCC ATCTTTACCT GTTCGTTCTT TGCCTCCTCC ACCAGCTAGA GTTGTAGAAC
CTGAGCCAGA AGCAGAGGAA GAAAAGGAAG AAGAGGCTCC AGCTGCTTCT TTACCTTCTC
GTAGTTTACC TGCTCGCAAC TTACCTCCTC CTCCAGCTCC AGCCGCTGAA CCTGAAGAAG
AAGAGGAAGA AGAAGCACCA GCTCCATCGT TGCCTTCCAG AGAAGCTGAA CCTAAGAAGG
ATGGTGCTAG TGCTGTAGCT GAGTATGACT ACGTCAAAGA TGAAGACAAC GAAATAGGCT
TTGCAGAAGG CGACTTGATC GTTGAAATCG AGTTCACTGA TGAAGAGTGG TGGACTGGTA
AGCACTCCAA GTCGGGCGAA GTTGGCTTAT TCCCGGCTGC TTATGTGTCG TTGAAGAAAG
AAGAAGAAAA GGCTACTGAA CCGGAAACTA AGGCTGAACC TGTCGTTGAA AAGAAGTCTG
AAGGAAGAAG TGCTACTGCT GAGTACGATT ACGAGAAGGA CGAAGATAAT GAAATAGGAT
TCGCTGAGGG TGACGTGATT GTTGAAATCG AGTTTATCGA CGATGATTGG TGGTCTGGAA
AACACTCTAA ATCCGGTGAG GTAGGTTTGT TCCCAGCCAA CTACGTCAGT TTGATCTGAT
ATGTAAATTT CTTTAAAACT TTATCTATAT GTGTCCTGAG ATCAATGCAA AAATGAAATG
ATAACT
|
|---|
| Protein sequence | MEKIDLSSNS RKIQDAYDKL VRGDPSVNYV VYSVDASLTL EVSQTGNGSL EEFVENFSDG
RIQFGLARVT VPGSDVSKNI LLGWCPDNAP SKSRLSFASN FAEVSKVLSG YHVQITARDQ
DDLDIDDFVQ RVRAAAGASY SLNTGTVKAA AAPVPKPVVV KPIVAKPSKP ASVSGTSFIP
KSTGKPVAPV KPKPPKPVAS SNDGWGDAQD VEERDLDSKP LEDVPSAYKP TKVNISELRS
QKSDTISSTP KPFKAEPKPA EKDDDNEPKS LSDRMKTYKS FEPSSDGRLT SLPKPKVSHS
VNTRYKLEAP SFGAKPTFGQ SDDSRKDKVV GGLSRNFAAE NGKTPAQIWA EKRGQYKTVE
AGESESGEVH AHSSDLAHKF EEQEEEEKPT PSLPVRSLPP PPARVVEPEP EAEEEKEEEA
PAASLPSRSL PARNLPPPPA PAAEPEEEEE EEAPAPSLPS REAEPKKDGA SAVAEYDYVK
DEDNEIGFAE GDLIVEIEFT DEEWWTGKHS KSGEVGLFPA AYVSLKKEEE KATEPETKAE
PVVEKKSEGR SATAEYDYEK DEDNEIGFAE GDVIVEIEFI DDDWWSGKHS KSGEVGLFPA
NYVSLI
|
|---|
| |