| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_80530 |
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| Symbol | SSH1 |
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| ID | 4851158 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 1076135 |
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| End bp | 1077861 |
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| Gene Length | 1727 bp |
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| Protein Length | 501 aa |
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| Translation table | |
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| GC content | 45% |
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| IMG OID | 640392866 |
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| Product | protein involved in co-translational pathway of protein transport |
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| Protein accession | XP_001387435 |
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| Protein GI | 126274144 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.453921 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CTCTTTTGGA AACAAGTACA AGAAAACTTC GGTGGTTGTC TATCACGTTT GTTCCGTCAC
TGCCTTTAAT ATGAGTGGAT GTATGTACCC CAGTATCTTG TCATAGCTAG TAAACATATC
CATAGCTATT GAGCAGAGCT TGTCGTATAG AATGTCTATA CACTTATAAT AATCTATACT
AGAGTATACA CATATTGTTT ACTACACTCC ATTGCACTAC TAACAACACA GTTCGCCTTC
TTGACTTAGT AAAGTTCTTC TTGCCGGTGT TGCCCGAAGT CGAATGGCCC GTTGAAGCCA
TTTCGTTCGA CGAGAGAATT GTCTTCACTG TGGGAAGTGG TATCATTTAT CTTGTAGGAC
AGATTCCTAT CTATGGTTTG GTGCCTAACG CCCAGTTCAA GATCGAGGAT CCTTTCTTCA
GCTTCAGATC AGTGTTTGCC ATGGAAAAAG GCACCTTGTT CGAATTGGGA GTCTTGCCTG
TTGTTACTGC AGCCTTCTTC TGGCAGTTGG CTGTAGGCTT GAAGTTGGTC AATGTCAACT
TGGGTCTCAG ATCTGACCGT GAGTTGTTCC AAACCGGTCA AAAGTTGACC AGTTTCGTTC
TCGCCATAGT CTATGGTGTT GGACTCATCT ATTCCGGCTA CTACGACAAC GCCATCCGTG
GCTATGATCC TTTATCTGAC TCTACTCCTT ATGGCTGGTA CGGGTTGATT CTCTTTCAGT
TTCTCTCGTG GTCGTTCATT ATTACTCTTA TCGTAGAAGT GTTTGACAAG GGATATGCCT
TTGGAAGTGG AGCCTTGTCG TTCTTGGCCT TGCAGACTGC TACCAACTTG ATTGCCGAAC
TTGTAGGTCT TGAGATTTTC CCAATCAACA ATTCTAACAA GTTCGAAAGC TATGGTGCAC
TCATCAACTT CACAAGAAAC TTTAGCTTTG ACATTTCCAA GATCGGTACT AACGTCTACA
ACTCGTTCAC CAGATTGCAG TTGCCCAACT TCACGCTGTT CTACATCACT GTTGCTACCA
CCCTTGCTGT GGTCTACTTG CAAAACTTGA GAATCGAACT TCCTATCAGA TCCACCAGAG
CCAGAGGTAT GAACAACGTT TTCCCAATTA GATTGTTGTA CACTGGAGCT TTGCCAGTGT
TGTTTGCTTA TACTGTTATC GCCAACATCC AGTACTTTGG CTATCTCGCT TACGTTGTCT
TGCAAAAGGC CAACGTCTCT AGCTTTGCAC TCTCCATAAT TGCCAGCTTC AACTTGGACT
CATACTCCAA CCGTTTGAAC TTGACATCTG GAGCCTTGTA CTTCTTCTCC AGTTCCCCAT
CGTTGTTGAG CACTATTCTC TCGCCTATCA GAACCGTAGT CTACTCTGCC ACCGTCATTG
TCTTGGCCAC CTGGTTCGCA GAGAAATGGA GTTACATCTC CGGCTCGGCT CCAAAGGACA
TTTCCAAACA ATTCAAGGAC CAGGGGATCT CTATTTCCGG TAAAAGAGAC ATCTCCATCA
CCAAAGAATT GTCTAGAGTT ATTCCAGTCG CTGCTGTCTC AGGCGGCTTC ATCTTGGCTG
CTATTGCTGT AGCCGGAGAC CTCTTGGGAG GCTTGGGTAA GAGTGCTGCC ACAATCGTAG
GTGTTTCTGC TGCTTTCAGT GTATTGGAAG AGTTCATGGT AGAATACCAA CAAAATGGTG
GAGCTTCGCA GCTTTCCGGT GCTTTATCCG GTGCTGGCTT CTTGTAG
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| Protein sequence | MSGFRLLDLV KFFLPVLPEV EWPVEAISFD ERIVFTVGSG IIYLVGQIPI YGLVPNAQFK
IEDPFFSFRS VFAMEKGTLF ELGVLPVVTA AFFWQLAVGL KLVNVNLGLR SDRELFQTGQ
KLTSFVLAIV YGVGLIYSGY YDNAIRGYDP LSDSTPYGWY GLILFQFLSW SFIITLIVEV
FDKGYAFGSG ALSFLALQTA TNLIAELVGL EIFPINNSNK FESYGALINF TRNFSFDISK
IGTNVYNSFT RLQLPNFTLF YITVATTLAV VYLQNLRIEL PIRSTRARGM NNVFPIRLLY
TGALPVLFAY TVIANIQYFG YLAYVVLQKA NVSSFALSII ASFNLDSYSN RLNLTSGALY
FFSSSPSLLS TILSPIRTVV YSATVIVLAT WFAEKWSYIS GSAPKDISKQ FKDQGISISG
KRDISITKEL SRVIPVAAVS GGFILAAIAV AGDLLGGLGK SAATIVGVSA AFSVLEEFMV
EYQQNGGASQ LSGALSGAGF L
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