| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_80500 |
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| Symbol | VPS29 |
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| ID | 4850972 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 597943 |
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| End bp | 599146 |
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| Gene Length | 1204 bp |
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| Protein Length | 249 aa |
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| Translation table | |
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| GC content | 39% |
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| IMG OID | 640392680 |
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| Product | protein involved in endosome to golgi protein transport |
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| Protein accession | XP_001387345 |
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| Protein GI | 126273933 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0622] Predicted phosphoesterase |
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| TIGRFAM ID | [TIGR00040] phosphoesterase, MJ0936 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0205498 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | CTTTATCTCA TTCTTCATGC TTACATTAGC CATTGGTGAT CTCTACATTC CTGAGCGAGC
TCTCGATTTG CCGGCCAAAT TCCGCAAGTT GTTGTGCCCC AATCCTCAAA GTATCCCTAC
CAATAGTAAA ATATCTGAGG TGATATGTCT TGGGAACATC ACCAATTCTG TTGATACGTT
GAAGTTTTTG CATGATTTAT CACCTTCGTT GCATTTAGTG AAAGGTGAGT TTGACGACTT
GCCAATATTG TCACAGCAGT TGTCGCTGGT GAGCAAGAAA GATGAGAATG TTGGTATATA
TGGGGTAATA ACTCATGATA ACTTGAGAAT CGGATTCACC AACGGCTACC AGGTAGTACC
CAAGAACGAC CCGTTGGCAT TGCTGACGTT GGCGAGAGAA TTGGATGTAG ATGTATTGAT
TTGGGGAGGA ACTCACAAAG TAGAAGCATA TACCTTAGAT GGCAAGTTCT TCGTGAATCC
TGGAAGCGGA ACGGGTGCTT TCAGTTTTGA TTGGCCCGAA TGGTACGAAG AAGAAGAGAA
CGCAAAGGAA GAAGAAATAA AGGAAAATGA AGACGAGGCA AAGCCAGAAG TAAACGAGGA
AGAAAAAGAA GAACCTACTG TGGAAACGAA AGAAGAAAAG AAAGATGAAA CTGAGGATGT
AGAAAAGAAA GACGCAGAAG TTACAGAAGT TTCAGAAAAC AAAGCAAATC TATTCGATGA
AGGACAAACG GAAACTGATG CACAAGATAC ACATGGTGAT CCTTTACTGG ATACCAGGGC
CAATGTAATA GACGAACACA TCTTAAGTGA AGTTACCGAG CTCAATGCCA TAGTTCCGTC
TTTCTGTCTT CTTGATACTT TTGGATCTAC TTGTACTTTG TATATCTACA CACATTTGAA
CGGCGAGGTT AAAGTGGACA AAGTGTCCTA CACTAAGGAA TAAGATGCTT GCACAACGAA
TTCCGGGTAC TAGTGTTGTA AATGCCTAAA ACTATTTACG CAACTATTAT AACATTGTGG
GCATACACTA TCAATACAAT ACCTGAGATA GAGTTAATTT TGAGTATTCA CTCAGAAAGA
AATTTACAGG TAGTTGCTTC TAAGATATCA AGTTCTATGA ATTCTTCGTT CCTTCATGAG
TAGTCATGGT GATAATACTA TAATATATAC ATTACAAGTA AAAATACAGT GGCAGCAATC
ATCT
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| Protein sequence | MLTLAIGDLY IPERALDLPA KFRKLLCPNP QSIPTNSKIS EVICLGNITN SVDTLKFLHD
LSPSLHLVKG EFDDLPILSQ QLSLVSKKDE NVGIYGVITH DNLRIGFTNG YQVVPKNDPL
ALLTLARELD VDVLIWGGTH KVEAYTLDGK FFVNPGSGTG AFSFDWPEWY EEEENAKEEE
IKENEDEAKP EKLQKANVID EHILSEVTEL NAIVPSFCLL DTFGSTCTLY IYTHLNGEVK
VDKVSYTKE
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