| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_80446 |
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| Symbol | VPS5 |
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| ID | 4850853 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 231552 |
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| End bp | 233813 |
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| Gene Length | 2262 bp |
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| Protein Length | 684 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640392561 |
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| Product | protein involved in Golgi retention and vacuolar sorting |
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| Protein accession | XP_001387696 |
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| Protein GI | 126273719 |
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| COG category | [R] General function prediction only
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5391] Phox homology (PX) domain protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.914331 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCAGG ATGATCTAAC TGCCTCTGTC TGGGACGACG TAGTTTCGCC CCATTCGGAA
CCTGCGACGT ATGGAAACGT AGCATCTTCT AGCTCTGGCC CGTTGGCCGC TGAATTCAAC
GATATGTCAA TCCAGGACGA GCAGGAAAAC GAAGACAAAG AAAGCAATGA AGATACTAAT
CACGAGAATT ATGATCATCA TCAAGAAGAA CAAAATCGTC CGTATGACTA CAACCACAAC
GAAGACTATC ACTACAATAC CAATTCTTCT TTCAATACAA ACAGCAACAC TTTCAACACA
GGCAGTAATT TCAATACAAA TTCCAACTTC AATAGCAGTG GTTTCAACGC CGGCTATCTG
AATCAAGTGG ACAATGTGTT TGACGACTCG TGGAGAAATC CGCTGGAGAT AGCACAGTTG
TCAGAATTGA AGAAGGAAGA ACGTAAAGAA CATACCCATC AATTACTTTC GGAATTGACC
CAAGGAGCCG AGGACAGCGA GCTTTTGCGT TCTGGAACCG TCTCACCAAA GGCAGTAACT
CTGGCTGAGG CGCTTTTTAA TGACAAGGAC AGTCCCATAA AGATGAACAA AGCAGCATTG
GCAGAGTCTG AAAATCTCAA ATCTCCACGA GGTAAGATCA AGCTCAAGAC GAGTCTGTTC
AAAACACCTC GTCCACGAAA ATTCAATGCC AAAGTCAATG TCAGCCACCT TCAGGGAACA
GAAAATAGTG AAAAGAACCC ATTGGGACCA CTAGGTAGCG AATCAGACGA TTCTAAGGGC
GACAAGGCTT CGGTGATATC TAGTTCAAGG GCAGAAATCC TCTTCAGAGA AGCAGAAGCG
CCTTTGTATG AGATCCAGCA CAAGTCTGAA GAAGAAAAGT TACGAGAATT GAGCCTTCAC
GCTCCAAAAC AGCCTATAGC ACAATCTAGA CCGCAAATGA CTCCACAGAG TCTGAAAACT
TCCCCACAAA AGCCAGTCTC AGACGAACAA AAGAATGGAG AAGACGCCAG AGACGATTTG
AATCAATTGG AGATCACAGT TGGTGATCCT ATGAAAGTTG GCGACATTAC TACAGCCCAT
ATCGTTTATG CCATAAGGAC CAAGAATAAG AACCCCAATG CAACCAGCTT CCCTGGTGCC
ACCGATGAGT TTATTACGGT ATCCAGAAGA TACAAGGACT TCAGGTGGAT ATACCACCAA
TTGCAAAACA ACCATCCAGG GAGAATCATT CCACCTCCTC CTACTAAGCA GACGTACATT
GGCAGATTCA ACGAGAACTT CATTGAAAAC AGAAGACTAT CACTCGAAAA AATGTTGAAC
AAAATAAGCA ACATCTCTGT GTTGAGTAAC GATGCCGACT TCGTCATGTT TTTGACTAGC
GAAGACTTCA TCAATGAGTC TCGTGAAAGA GAACGCTTAA GTGGTTCTGG AGCTTCTACA
CAAAACAACG ACTTCTTGGA CAATGCCACT ACTCTAGGAG ACGATGGGGC AGCTTCCACT
GCCTCGTTGA GCAGTTCTGT CTCAACGCCG ATTATCTCTG GTGGTGGAAG TGGATTCATG
AGCTCGTTGT TTTCCATTTC CACCAAGATT AACGAGCCTG ATGAGTACTT CTCTCACAAG
AGACAATATG TAGACGAACT TGAGTATAAT TTAAAGCAGT TCTACAATGC AATCGAACTT
GTGGGCACAC AGAGAATCGA CATGATTGGT GTTCTAGACG AGATTTCGTT GGCCATCGAC
GAGTTGGCCA ACTTGGAAAT CCTGAAGGTT ACCACTGAGT TGTTGAGTGC ATTCAGCGAG
GTCCAGCTTA AGATCAAGGA AAACTTGGAC AGAATTAACT TGCAGGATCA ATTGACATTG
GGGTTCACCA TTGAAGAGTA CTTGAGAATC ATCGGCTCTA TCAAGTTTGT CTTTGAGACC
AGATCCAAGA TTTATCAGCA ATACTATAAC TTCAACCAGG AGTTGCTAAA GAAGCTGTCC
CAGCTCGACA AGTTAACCAG AAAGTATAAG GCACCAGTTG ACAAGGTCAA TCTGCTCACA
TTTGAAGTGG ACAAGTTGAA ACAAAAGACA AGTGCATTTG AGAACAGTTT CAACAGCATC
AGTGAGACCA TCAAGGAAGA AATGGAGAAC TTTGAGTACG AGAAGATCGA GGATTTCCGC
AACAGTGTCG AGATCTTCAT CGAGAGCTCG ATCGAGTCGC AGAAGGAGGC CATTGAGTTA
TACGAGACTT TCTACGAGCG CCAGAATTTG GCCAGTGTAT GA
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| Protein sequence | MEQDDLTASV WDDVVSPHSE PATYGNVASS SSGPLAAEFN DMSIQDEQEN EDKESNEDTN
HENYDHHQEE QNRPYDYNHN EDYHYNTNSS FNTNSNTFNT GKLKKEERKE HTHQLLSELT
QGAEDSELLR SGTVSPKAVT LAEALFNDKD SPIKMNKAAL AESENLKSPR GKIKLKTSLF
KTPRPRKFNA KVNVSHLQGT ENSEKNPLGP LGSESDDSKG DKASVISSSR AEILFREAEA
PLYEIQHNLK TSPQKPVSDE QKNGEDARDD LNQLEITVGD PMKVGDITTA HIVYAIRTKN
KNPNATSFPG ATDEFITVSR RYKDFRWIYH QLQNNHPGRI IPPPPTKQTY IGRFNENFIE
NRRLSLEKML NKISNISVLS NDADFVMFLT SEDFINESRE RERLSGSGAS TQNNDFLDNA
TTLGDDGAAS TASLSSSVST PIISGGGSGF MSSLFSISTK INEPDEYFSH KRQYVDELEY
NLKQFYNAIE LVGTQRIDMI GVLDEISLAI DELANLEILK VTTELLSAFS EVQLKIKENL
DRINLQDQLT LGFTIEEYLR IIGSIKFVFE TRSKIYQQYY NFNQELLKKL SQLDKLTRKY
KAPVDKVNLL TFEVDKLKQK TSAFENSFNS ISETIKEEME NFEYEKIEDF RNSVEIFIES
SIESQKEAIE LYETFYERQN LASV
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