| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_75017 |
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| Symbol | RPT1 |
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| ID | 4851187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 1149688 |
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| End bp | 1151418 |
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| Gene Length | 1731 bp |
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| Protein Length | 446 aa |
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| Translation table | |
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| GC content | 43% |
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| IMG OID | 640392895 |
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| Product | protease subunit component |
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| Protein accession | XP_001387450 |
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| Protein GI | 126274173 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1222] ATP-dependent 26S proteasome regulatory subunit |
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| TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0564069 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CCAGAAACAA GTGCCTCTTG AAAAGCGAAG TTTAGATAAT TGCTGGACGT GTTTTTGACT
GAGAGAAAAA ACGGCTGAAA TCAAACGTTT TTGAGAAGAG AAAGATAGAT TTAGATTCTC
TTTAAGATAC TTTAAATCAT ACAAACCGTA ACAGTATCAT CTGGTGTTAT CTTGCACAGC
AAAGACTGAT ATCTTATACA GCATAAGAAG ATCTGTAAAG TTGAATACTT CACAATTGGT
TCATACTGTT AGATTATCTT ATCATTCATA GGAATTGCGG ATTTTCACCA ATTTGTATCC
ATTTCATACA AGCTCAATCA TACCATCATA AATCATAACA ATGCCGCCTA AAGCAGACTG
GGACAAGTAC GTCGCGCCAA TTGATGACGA CGAAAAGAAT CAGGAGAAGA TCGTTCCCCT
TTCGGAGGGA GACATCCAAG TTCTCAAGAC ATACGGAGCA GCTCCATATG GAGCGCAATT
GAAGCAGATC GAAAAGGACT TGAAAGACAT CGAAGAAAGA ATCAAGGAAA ATATCGGTAT
TAAGGAGTCC GATACGGGGT TGGCTCCTCC ACACTTGTGG GATGTCATGG GAGACAAGCA
GAGAATGTCT GAAGAACAAT CACTTCAAGT CGCTCGTTGC ACAAAGATCA TTGAAGCTAC
GACACCTGCT CAGGCTGGTG CCATCCAGAA CGCAGACAAC AAATCCAAGT ACGTGATAAA
CATCAAACAG ATTGCCAAAT TCGTCGTGGG ATTGGGAGAA AGAGTCTCTC CAACGGATAT
AGAAGAAGGC ATGCGTGTAG GTGTAGACAG ACAGAAGTAT GAAATCCAGT TACCTTTGCC
ACCACGGATT GATCCTTCAG TCACAATGAT GACTGTAGAA GAGAAGCCTG ATGTCACCTA
TTCAGACGTT GGAGGCTGTA AAGAGCAGAT CGAAAAGTTG AGAGAAGTGG TAGAGTTGCC
CTTGTTATCG CCAGAAAGAT TCGTCAAGCT CGGAATTGAT CCTCCAAAGG GTATCTTGCT
TTATGGACCT CCCGGAACTG GTAAGACATT ATGTGCACGT GCTGTAGCTA ACAGAACTGA
TGCCACTTTC ATCAGAGTTA TTGGGTCTGA ATTGGTGCAG AAGTACGTTG GTGAAGGAGC
CAGAATGGTG AGGGAGTTGT TTGAGATGGC CAGAACCAAA AAGGCATGTA TCATCTTCTT
CGATGAAGTT GATGCTATTG GAGGAGCTCG TTTCGACGAT GGTGCTGGTG GAGACAATGA
AGTACAAAGA ACCATGTTGG AGTTGATCAC ACAATTGGAT GGGTTTGACC CTCGAGGCAA
TATCAAGGTG ATGTTTGCCA CCAACAGACC CAACACATTG GACCCAGCCT TATTGAGACC
GGGAAGAATT GACAGAAAGG TGGAATTCTC ATTGCCTGAC TTGGAAGGAC GTGCCAACAT
CTTTAGAATC CACTCCAAGA CGATGAGCTG TGAAAAGGAC ATCAGATGGG AGTTGATCTC
AAGATTGTGC CCCAATGCCA CCGGAGCTGA GTTGAGGTCG GTGTGTACAG AAGCCGGTAT
GTTTGCTATT AGAGCCAGAA GAAAGGTTGC CAACGAAAAG GACTTCTTGA AGGCTGTTGA
CAAAGTCATC AAGGGTAACT TGAAATTCAG CTCTACAAGT CAGTACATGC AATACAACTA
GTCCGCTAGA TTGGCACTGT TTACGGTGTT ATACATTAAT GCAAAAATAA G
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| Protein sequence | MPPKADWDKY VAPIDDDEKN QEKIVPLSEG DIQVLKTYGA APYGAQLKQI EKDLKDIEER
IKENIGIKES DTGLAPPHLW DVMGDKQRMS EEQSLQVARC TKIIEATTPA QAGAIQNADN
KSKYVINIKQ IAKFVVGLGE RVSPTDIEEG MRVGVDRQKY EIQLPLPPRI DPSVTMMTVE
EKPDVTYSDV GGCKEQIEKL REVVELPLLS PERFVKLGID PPKGILLYGP PGTGKTLCAR
AVANRTDATF IRVIGSELVQ KYVGEGARMV RELFEMARTK KACIIFFDEV DAIGGARFDD
GAGGDNEVQR TMLELITQLD GFDPRGNIKV MFATNRPNTL DPALLRPGRI DRKVEFSLPD
LEGRANIFRI HSKTMSCEKD IRWELISRLC PNATGAELRS VCTEAGMFAI RARRKVANEK
DFLKAVDKVI KGNLKFSSTS QYMQYN
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