| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_74319 |
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| Symbol | GDB1 |
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| ID | 4850919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 440550 |
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| End bp | 445815 |
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| Gene Length | 5266 bp |
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| Protein Length | 1526 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640392627 |
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| Product | glycogen debranching enzyme |
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| Protein accession | XP_001387322 |
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| Protein GI | 126273880 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3408] Glycogen debranching enzyme |
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| TIGRFAM ID | [TIGR01531] glycogen debranching enzymye |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATTGGCTCTT CTACTACGGT TGCACATCGT TTGTGGAGCG CAATTGACTA TAGACACCAC
TTTACAGCAT TGTTTCTGAG AGATACCGAC GTCTCAATCC GAATCCACAA CGTCGCTCTT
TGATTCATCC TTCTTCAAGA ATTGCACTTC ATAGATTGAT TGTATTTTGT TCGTGATTTT
TTCCAATTTA CTATATTTAC TGATTCAGTC CGAATTTACA TTCCTGATTC ATTCATAGTC
ATTGTTCTGA TTTTACTAAT TTGCAGATTC AAATAATTCT TTCCTTTGCT GGAATCTTAC
ACTGTTCCTG AGATTTTTCG ACCGAAATCC TCTAGATATA CTTACTCTTT TCAGTCTTTT
TTGCTCGGGT TTCCACGTTG CTTTCCTCGT ACCCAAACCC CATCGTTGCC CTTATCCGCT
TCTTTCGAAT CCCGTTCCGG GCCCTTATTC TGCTCATTTT CCATCTTTTC AACAAACTCC
GAGATTTCAG AGCATTGAAA AAAACAGGAG TCGTGAAATC TGAAAACCCC GAAAAATCTG
AAAAAATAGA AAAATTCAGC ATCAATTCCA ATACAAATTC TACTCCTACT TCAGGCATGT
CACAAAGAAC GTTACTTCTT CGTTTATCCA ACTCCGGGGA ACCGGAAAAT AGCGAAGGCA
TATCCAATGG AATCTACATA TTGCCTGCTC TTCCGCATCT TAAGGGGTAT AAGAAGGGAG
ACCCCCTTTT CCACTTGGTA TTTCAACTCA ATGCTGCTTC ATCAGTTACT AGAGATGGTA
CATTGTTGAC AAACTTACCC AAAGATTCGA GCTCACCATT CAAAAGACAC GAATACAGCG
AATATCTCAT TGGATCTTCT TTTGACAAGG ACGCTTCGAT CTCAGTGCCA ATCTTCAGAC
CTGGTTCGTA CAATTATTTC ATTAGGTATA CTGATGCCAA CGACACTTCA GCTACGACAG
AAAAGTTCTA TTTCAATGTT CCGCCAGCTC TTTACATCAA CGGCGAGTAT GTTGCCTTTA
ATGCTCTTAA CGTTGAAACA GTAGTCTCGA AGTGGGTCGG AAGCTTGTCG AACTGGGAAA
CTTTCTTCAC CAGAGTTGCT GACAAGGGAT ACAACATGAT CCACTTCACT CCGCTTCAAG
AACGAGGATC ATCAGATTCG CCTTACTCCA TCTATGATCA GTTGCAGTAC GATCCCAAGA
TCTTTAAGGA CAATTCCGAG GCTATTTCCG TCATTAAGAA GCTTTTGGCT AACCACGGCT
TGTTGTCGTT GACGGATGTG GTGTGGAATC ACACTGCTGA CAACTCCGAG TGGCTTCGCG
AGTACCCTGA CTCGGGATAC AATGCCGAAA CAGCTCCCCA CTTGACGGCT GCCATCGAAT
TAGATGCGCT GTTATTAGAA TTTTCAAGAA ATTTGAAGAG CCTCAGTTTG CCGACCGAAA
TCAACAACGA ACATGACTTA CATTTAGTCG TTGACGGAAT CTCTCAGCAT GTCATCGGCA
AGCTTCAGCT CTGGCAGTAC TACGTCTTCA ACAAGGAAGA TACACTTGCC GAGATCAAGA
AGAACTTCTA CGATAGTACA TACAAAATCA CTCCTGTAGA TATCCCTACC TCTGTGAACA
AAGATAGCAT CGAAGAACTC GCAACATATA CCCTTGAGGT TGCCTCTGTG CACGGCCAGC
CCATCTTGGA GAAGCGATTC TCTAACAAAT TGGACGCCAG AAAGTTCCTC GGCATCTTGT
ACACTGTGTT GGAGGCTAGA GACCTTGACT TCGAGGTTGT TGCCCAGAAG TCGAGTGCCA
TCATCGACCA GATCAACGCT CCCTTATACT CTTCATATGA TGATGACGTC AAGTCGATTC
TTAGCCAAGT TTCTGACAGA ATTAAGTTCT TAAGACTTGC CGGAAACGGT CCTAAATTGG
GCCTTGTCAC CGACAAGAAC CCCTTGACAG AGGCATACTT CACAAGATTC ACTGGTAAAG
ATGGTAAATC GTGGGCCTTG GCGAACAACG GCTGGATCTG GGGTGGGAAC CCGCTAGTAG
ACTTTGCGTC TCTGAAATCA AAGGCTTATT TGCGTAGAGA AGTTATTGTA TGGAGTGACT
GTGTCAAGTT GAGATACGGC TCTGGTCCTC TGGATTCTCC CCATTTATGG GAAAGAATGA
TCCAGTACAC CCAAGACTGT GCCCGTACCT TTAGTGGATT CAGAATCGAC AACTGCCACT
CCACACCTTT ACACGTAGGA GAAGCTTTGT TGGATGCTGC CAGAGAAGTA AACTCCAACT
TGTATGTTGT AGCCGAGCTT TTCACAGGCT CTGAGGAGAT GGACAAGTTT TTCGTGGAAA
GATTAGGAAT CAACACCTTG ATCAGAGAAG CCATGCAAGC CTGGAACGTA CAAGAGTTGT
CTAGATTAGT TCACAAACAC GGTGGTAGAC CGATTGGATC TTTGACCTGG TTGCCCTTGG
ACGACTTTGC CTTGCCAGCT GATAAGGAGC CTACTAAGGG AAAGTACATT GACTCGTACA
CGGAAATGGA AATACCCAAA GTGTTGACCA AGCAAGCTCC ACATGCAATG TTTATGGACT
GTACTCACGA CAACGAGATG CCAGCGCAGA AGAGAACACC AGAAGATACG TTGCCCAACG
CTGCGTTGGT GGCCTTCTGC TCATCTGCCA TTGGTTCTGT TTATGGGTAT GATGAGATCT
TTCCTCGTTT GCTTGACGTA GTTAATGAAA CTAGACAATA TTCAATAGAG GACAACGGTA
TTGGTCAGGT GAAGAAGAAG CTTCATGCCA TCAGAAAGAA CCTTGCTGCT GAAAGCGAAG
ATATTTTGCG AGACCATGAG ATGTATATTC ACCACGAAGG CCAGTATATT ACCATCCAGA
GGCACAATGC TAAGACTGGA AAGGGGTGGT TTTTGATTGC CAGATCGAAG TTCGATGGCC
ACGAAGGGCC TCAGACTTTG TCTCCTGTAG TATTAAGTGG TACAATAGCC AAGTGTGAGT
TCAGCTACAC ATTGAAAGTC ACTGGCGAAT ACCAACACAG CGACACTGTT CTCACGGGTA
TCCCAGCCAA AGTAGAAGAA ATCCGCAGTC CAGCCATTGA GTTTAATGGC AAGGAAACTA
TCATTAAAGT CGACGATTCC TTCATTACTG GTTCCATTGC TGTCTTTTCC ACGGAAATTC
CAGGAGTAGA CTTGTCTTTG GATAAGTTCG TTAAAGAAGG TGCCGTAGAA GCCTCTCTAG
GCTTAGACTT GAGTGATTTG AACGCTCTCC TTTACCGCTG CTCTTCTGAA GAAAGAGATG
CTTCATTCGG CAAGGAAGAC GTTTATAGTA TTCCCGGATA TGGTGCCTTG GTCTATGCTG
GTTTGGAAGG TTGGAACACG GCTCTTAAAC ATGTTATCTG GCAGAACAAC TTGGGCCATC
CGATCTGCGA CCATATCAGA CAAGGCGAAT GGGCTCTTGA TTACATAGTC AACAGGTTGG
ATATCTACCT GAAGAACTCG CCTAACTTGA AGAAATTCCA GGAGTGGTTG AGATCTCGGA
TTGAAGCCAT CAAGAAGGTA CCTTATTTCT TGAGACCTCA CTATTTCACT CTTGTAGTCG
GTATAGCCTA CGAAGCTGCC AGATTCAGAG CATTGAGAGG CTTGGGTGTA CATGTTCAAA
CTGCTACTAA CTTTGTTCAG AGCTTGGCTC TTACTTCTGT GCAAATGATT GGCAGAATGA
ATAACACTTC GCTCTTGCCT ACGGAACAGG TTTCGTGTAT AGCTGCCGGC TTACCTCACT
TCAGCAATGA TTACATGAGA TGTTGGGGCA GAGATGTGTT TATCAGTTTC CGTGGATTGA
TGTTGGTAAC CGAGAGATAC GATGACGCTA AGAATCACAT CTTGGGATTT GCCAAAACCT
TGAAACACGG CTTGATACCC AACTTGTTGG ATGCAGGTAG GAACCCTCGT TACAACGCCA
GGGATGCTGT CTGGTTCTTC TTACAAGCCA TTCAAGAGTA CGTCAAGTAT GCTCCAGATG
GTATCAAGAT TTTGGACGAA AGGGTTGCGA GAAGATTCCC CTTGGACGAT ACGTACATCC
CTCATACCGA TAAGAGAGCT TTTAGTTACG AGAGCTCAAT TCGTGAAGTC ATCTATGAGA
TTCTTGCCCG CCATGCCAAG GGTATCAAAT ACCGTGAAGC CAACGCTGGT CCTAATCTTG
ATTCACAGAT GAAGGACGAA GGTTTCAACG TGGAAGTTTA TATTGACTGG AAAACCGGTC
TAGTACATGG CGGTTCTCAG CTGAACTGTG GAACATGGAT GGACAAGATG GGAGAAAGTG
AAAAAGCTGG CTCCAAGGGA GTTCCAGGCA CACCTAGAGA CGGAGCTGCT ATCGAGTTGC
AAGGTTTAAT GAAGAGTGCT TTGAGATTCG TCAACGAGTT GAACACAAAG GGCTCATTTG
AGTATACGGA AGTAGAAAAG AACGATGGTT CCAAGATCTC GCTTGTTGAC TGGGAAAAAT
TGGTACAAGA TAACTTCGAA AAGCACTTCT TCATTCCTGT AGATGCCTCT GACGACGACA
AATTTGTAGT AGACGCTTCA TTGGTCAACA GAAGAGGTAT TTACAAGGAC TTATACAGAT
CTGGAAAACC ATATGAAGAC TATCAGTTGA GAGCAAACTT CCCTATTGCA ATGGTAGCTG
CTCCTGAGTT GTTCACGCCC AAGAATGCGC TCGCTGCTCT CAGAACAGCT GACCGTGTCA
TCAGAGGCCC TGTTGGGTTG AGGACTTTGG ATCCTTCGGA CTGGAACTAC AGACCTTACT
ACAACAACAG TGAGGATAGC GAGGACTTTG CTACTTCCAA GGGTAGAAAC TACCACCAGG
GCCCCGAGTG GGTCTGGGTG TTTGGCTACT TCTTGAGAGC CTTTATGTTG TTCCATTACA
TTGAAGACAA GAGTTGTAAG ACCGAACTGG GTGAGCTCAC AGACTTCATG TTAACGGGAT
TGAATGCCAG AATCCAGGGC CACCAGAAGT GGATCAAAGA AAGTCCTTGG GCCGGTTTGA
CTGAGTTAAC CAATAAGGAT GGTGCGTTCT GTTATGACTC TTCGCCTACA CAGGCATGGA
GTACTTCTTG TTTGCTTGAC TTGTACTACG ATTTGTGGAG CGACGAACAC TACAAGAACA
GTAATGGCAG GAAATAAACT GAAATAAACT GGAAATAAGC TTCAGTACGA CTTTATTTCA
TTTTTAGATC TATTTAGTTT GCTTTATTCC GAATAGTGAA ATTTGC
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| Protein sequence | MSQRTLLLRL SNSGEPENSE GISNGIYILP ALPHLKGYKK GDPLFHLVFQ LNAASSVTRD
GTLLTNLPKD SSSPFKRHEY SEYLIGSSFD KDASISVPIF RPGSYNYFIR YTDANDTSAT
TEKFYFNVPP ALYINGEYVA FNALNVETVV SKWVGSLSNW ETFFTRVADK GYNMIHFTPL
QERGSSDSPY SIYDQLQYDP KIFKDNSEAI SVIKKLLANH GLLSLTDVVW NHTADNSEWL
REYPDSGYNA ETAPHLTAAI ELDALLLEFS RNLKSLSLPT EINNEHDLHL VVDGISQHVI
GKLQLWQYYV FNKEDTLAEI KKNFYDSTYK ITPVDIPTSV NKDSIEELAT YTLEVASVHG
QPILEKRFSN KLDARKFLGI LYTVLEARDL DFEVVAQKSS AIIDQINAPL YSSYDDDVKS
ILSQVSDRIK FLRLAGNGPK LGLVTDKNPL TEAYFTRFTG KDGKSWALAN NGWIWGGNPL
VDFASLKSKA YLRREVIVWS DCVKLRYGSG PLDSPHLWER MIQYTQDCAR TFSGFRIDNC
HSTPLHVGEA LLDAAREVNS NLYVVAELFT GSEEMDKFFV ERLGINTLIR EAMQAWNVQE
LSRLVHKHGG RPIGSLTWLP LDDFALPADK EPTKGKYIDS YTEMEIPKVL TKQAPHAMFM
DCTHDNEMPA QKRTPEDTLP NAALVAFCSS AIGSVYGYDE IFPRLLDVVN ETRQYSIEDN
GIGQVKKKLH AIRKNLAAES EDILRDHEMY IHHEGQYITI QRHNAKTGKG WFLIARSKFD
GHEGPQTLSP VVLSGTIAKC EFSYTLKVTG EYQHSDTVLT GIPAKVEEIR SPAIEFNGKE
TIIKVDDSFI TGSIAVFSTE IPGVDLSLDK FVKEGAVEAS LGLDLSDLNA LLYRCSSEER
DASFGKEDVY SIPGYGALVY AGLEGWNTAL KHVIWQNNLG HPICDHIRQG EWALDYIVNR
LDIYLKNSPN LKKFQEWLRS RIEAIKKVPY FLRPHYFTLV VGIAYEAARF RALRGLGVHV
QTATNFVQSL ALTSVQMIGR MNNTSLLPTE QVSCIAAGLP HFSNDYMRCW GRDVFISFRG
LMLVTERYDD AKNHILGFAK TLKHGLIPNL LDAGRNPRYN ARDAVWFFLQ AIQEYVKYAP
DGIKILDERV ARRFPLDDTY IPHTDKRAFS YESSIREVIY EILARHAKGI KYREANAGPN
LDSQMKDEGF NVEVYIDWKT GLVHGGSQLN CGTWMDKMGE SEKAGSKGVP GTPRDGAAIE
LQGLMKSALR FVNELNTKGS FEYTEVEKND GSKISLVDWE KLVQDNFEKH FFIPVDASDD
DKFVVDASLV NRRGIYKDLY RSGKPYEDYQ LRANFPIAMV AAPELFTPKN ALAALRTADR
VIRGPVGLRT LDPSDWNYRP YYNNSEDSED FATSKGRNYH QGPEWVWVFG YFLRAFMLFH
YIEDKSCKTE LGELTDFMLT GLNARIQGHQ KWIKESPWAG LTELTNKDGA FCYDSSPTQA
WSTSCLLDLY YDLWSDEHYK NSNGRK
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