| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_69669 |
|---|
| Symbol | TRP5 |
|---|
| ID | 4851612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 2334859 |
|---|
| End bp | 2337079 |
|---|
| Gene Length | 2221 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | |
|---|
| GC content | 44% |
|---|
| IMG OID | 640393320 |
|---|
| Product | tryptophan synthetase |
|---|
| Protein accession | XP_001387018 |
|---|
| Protein GI | 126275035 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain
[COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit
[TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.390453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.887683 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCTT TATTGAAAGA AACTTTTGCT AGGTGTAAAA AAGAGGGACG AAATGCTTTG
GTCAACTTCA TTACTGCTGG TTACCCTACT ATTGAGGACA CAGTTCCAAT CTTGAAGAGC
ATGCAAGATG CCGGTGTAGA CATCATTGAA TTGGGTATCC CATTCTCCGA CCCAATTGCT
GATGGTCCAA CCATCCAAGC TGCTAATAAT GTCGCGTTGG ACAACGGAAT CACCGTCCCA
AAGTGCTTGG ACTTGGTCAA GCAAGCAAGA GAACAAGGTG TCACTGTTCC AATCATATTG
ATGGGTTACT ACAATCCAAT CTTAAAGTAC GGTGAAATCA AGTTGATTGA GGACTCTGCA
AGGGTAGGTG CTAACGGTTT CATTGTCGTC GACTTGCCTC CTGAGGAAGC CATCAAGTTC
AGATCGTCTT GTGCACGTTA TGGATTGTCT TATGTTCCTT TGGTTGCCCC TGCCACTACT
GATGAAAGAT TGAAGGTCTT GGGAGAAATC GCAGATTCCT TTATCTACGT AGTTTCTAAG
ATGGGTACCA CTGGTGCTTC CAAATCTGTT TCTTCCGGTA TCACTGAGTT GTGTGCTAGA
GTTAGAAAAT TTGCCGGCTC TACCCCAATT GCCGTAGGTT TCGGTGTGTC TACAAGAGAG
CATTTCTTAA CTGTTGGTGA GAGCGCTGAT GGTGTGGTTA TTGGTTCTAG AATCGTGACC
TTAATTGGTG AATCTAAGCC AGGTGAAAGA GGTGTGACCG CTTACAAGTA TGTCAAATCC
ATTTTAGGTG AAGGCTTTTC CGTCAATGCG CCAACTTCTT TCTCTCGGGC TGTAGTTATA
GATGGAACTG AAACTAAGCC AGTTCTTGAA GAGGACCACA AGTTCAACCC AAAATTTGGT
GAATTTGGTG GTCAATATGT TCCTGAAGCA TTGCACACTT GTTTGGCTGA ATTGGAGAAA
GGATTTGAAA GCGCAGTTGC TGATCCCGAG TTCTGGAAGG AATTCAAGGA CTTGTACTCT
TACATTGGAA GACCATCTTC TTTGCATAGG GCCGAAAGAT TGACTGAATA TGCCGGAGGC
GCTCAGATCT GGTTGAAGAG AGAAGATTTG AACCATACTG GTTCTCACAA GATCAACAAT
GCCTTGGCTC AAGTGTTAAT TGCTAAGAGA TTAGGTAAGA AGAAGATTAT TGCTGAGACT
GGTGCTGGTC AGCATGGTGT TGCTACTGCT ACTGCATGTG CTAAGTTTGG ATTGGAATGT
ACCGTTTTCA TGGGAGCCGA AGATGTAAGA CGTCAAGCCT TGAATGTGTT CAGAATGAGA
ATCTTGGGTG CAAAGGTTGT TGCTGTCACT AATGGTACCC AAACATTGAG AGATGCGACT
TCTGAAGCCT TCAGATTCTG GGTATCAAAC TTAGAGTCAA CGCACTATGT TGTCGGTTCA
GCAATTGGAC CACATCCATA CCCAACCTTG GTTAGAACCT TCCAAAGTGT TATTGGTCAA
GAAACCAAAG AGCAGTTTAA GACTTTAAAC GGCGGTAAGT TACCAAACGC CGTTGTTGCT
TGTGTCGGCG GTGGTTCGAA CTCCACTGGT ATGTTCTCTC CTTTTGAACA CGATACTGAA
GTCAAAATGT TAGGTGTCGA AGCTGGTGGT GACGGCTTAG ACACTGATCG CCATTCTGCA
ACTTTGACGG CAGGTATTCC AGGTGTGTTC CATGGTGTCA AAACTTACGT TCTTCAGGAC
AGTGATGGAC AGGTTCATGA CACTCATTCA GTTTCTGCGG GTTTAGACTA TCCTGGCGTA
GGTCCAGAAT TGGCATTTTG GAAGAGCACT GGTCGTGCTG ACTTCGTTGC TGCTACAGAT
GCTCAGGCAT TGATCGGATT TAAATTATTG TCCCAATTGG AGGGTATAAT TCCAGCTTTG
GAGTCTTCTC ACGCTATTTA TGGTGGTGTT GAGTTGGCTA AGACTATGCC AAAGGATCAA
CACATTGTTA TCAATGTTTC AGGACGTGGT GACAAGGATG TGCAAAGTGT TGCCGAAGTT
TTACCGAAGT TAGGCGAGCA GATTGGCTGG GACTTGAGAT TCGAAGCCGA TCCTACGAAG
TAAGTTTAGT TAATACTAAG AAATTCTATA TTTTTTATAA CCTCTAATAA CAATGCTTGG
ATGATTTTAC AATTCTTCAG CCATGTTCAT GATTAACAAG ATTGTTGATG TCCAACCCAA
G
|
|---|
| Protein sequence | MSALLKETFA RCKKEGRNAL VNFITAGYPT IEDTVPILKS MQDAGVDIIE LGIPFSDPIA
DGPTIQAANN VALDNGITVP KCLDLVKQAR EQGVTVPIIL MGYYNPILKY GEIKLIEDSA
RVGANGFIVV DLPPEEAIKF RSSCARYGLS YVPLVAPATT DERLKVLGEI ADSFIYVVSK
MGTTGASKSV SSGITELCAR VRKFAGSTPI AVGFGVSTRE HFLTVGESAD GVVIGSRIVT
LIGESKPGER GVTAYKYVKS ILGEGFSVNA PTSFSRAVVI DGTETKPVLE EDHKFNPKFG
EFGGQYVPEA LHTCLAELEK GFESAVADPE FWKEFKDLYS YIGRPSSLHR AERLTEYAGG
AQIWLKREDL NHTGSHKINN ALAQVLIAKR LGKKKIIAET GAGQHGVATA TACAKFGLEC
TVFMGAEDVR RQALNVFRMR ILGAKVVAVT NGTQTLRDAT SEAFRFWVSN LESTHYVVGS
AIGPHPYPTL VRTFQSVIGQ ETKEQFKTLN GGKLPNAVVA CVGGGSNSTG MFSPFEHDTE
VKMLGVEAGG DGLDTDRHSA TLTAGIPGVF HGVKTYVLQD SDGQVHDTHS VSAGLDYPGV
GPELAFWKST GRADFVAATD AQALIGFKLL SQLEGIIPAL ESSHAIYGGV ELAKTMPKDQ
HIVINVSGRG DKDVQSVAEV LPKLGEQIGW DLRFEADPTK
|
|---|
| |