Gene PICST_69023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_69023 
Symbol 
ID4851418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp1768182 
End bp1768977 
Gene Length796 bp 
Protein Length237 aa 
Translation table 
GC content44% 
IMG OID640393126 
Productpredicted protein 
Protein accessionXP_001387570 
Protein GI126274546 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0412] Dienelactone hydrolase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.348207 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TGAAATCACA AACATACACT CACAATGGCT TCTAATCCAC CAGGCGAATG CTGTAGAACT 
CGTAACTTCC ACGAAGGTAC TCCCATCGGA ACTCACAAAA CCATTCTCGG GCTCAACACC
TACCAAGTTG GTGCTGAATA CGGCAACGAC AGAATCATCG TGATTCTCGT CGATGTCCAT
GGAAACAAGT TCAACAACAC TTTGTTGCTT GCTGACGAAT TGTCCAAGGC TAAGTACCAA
GTCTTAATTC CGGACATCTT GAGCAACGAT CCAGTCGATG GCCAGGATTT CGCTACTTGG
TTGCCTAAAC ATGGTCCGGA AATTACTGCT CCTATTGTTG ACGCTTTCTT GAAGGCTGTC
AATGACGAAT TGAAGCCAAA GTTCCTTGCT GGTATTGGCT ACTGCTTCGG TGCTAAGTAT
GTCATTCAGA ATCTTTCTTC TAAGGGTCAC TTGTCTGCTG GTGCCGTTGC TCATCCTTCG
TTTGTCACTA TTGAAGAAGT CTCAGCTATC AAGAAACCAA TTCTTATTTC GGCTGCTGAA
ACTGACTCCA TCTTTACTGT CGAGTTGAGA CACCAGTCTG AAGCCGAGTT GATCAAGATC
GGTGCTCGCT ACCAACTCGA CTTGTTCTCT GGTGTTGAGC ACGGCTACTC CGTTAGAGGT
GATATCTCGA ACCCTGTTGT CAAGTACGCA AAGGAAAAGA CTCTTGACGA CCAGGTCAGA
TGGTTCAACC AATTCTAGAT GACTGATTCT ATATAGTTAA ATTGTTAGAG AGATTTGAAT
ATATATTTAC TGTTAG
 
Protein sequence
MASNPPGECC RTRNFHEGTP IGTHKTILGL NTYQVGAEYG NDRIIVILVD VHGNKFNNTL 
LLADELSKAK YQVLIPDILS NDPVDGQDFA TWLPKHGPEI TAPIVDAFLK AVNDELKPKF
LAGIGYCFGA KYVIQNLSSK GHLSAGAVAH PSFVTIEEVS AIKKPILISA AETDSIFTVE
LRHQSEAELI KIGARYQLDL FSGVEHGYSV RGDISNPVVK YAKEKTLDDQ VRWFNQF