| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_66630 |
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| Symbol | |
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| ID | 4851749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 2734760 |
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| End bp | 2737612 |
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| Gene Length | 2853 bp |
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| Protein Length | 950 aa |
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| Translation table | |
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| GC content | 40% |
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| IMG OID | 640393457 |
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| Product | predicted protein |
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| Protein accession | XP_001387091 |
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| Protein GI | 126275482 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG5021] Ubiquitin-protein ligase |
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| TIGRFAM ID | [TIGR01053] zinc finger domain, LSD1 subclass |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.214435 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTACGAA GAAAAAGTAG CGTCGTTGCT CAGAACCAGA ACCTGCCTCG AAATCAAAAT
CATAATCAAA GTCATAACCA GATTAACAAT GCTGAGCAAA ACACCAATAG TAGCAACAGT
AGCCAGATTT CTTCTACAAT TGCCTCTGAG CCAAGATCAA CTCCCTGGAG AATCAAGGAT
TTCCTCAAGC TCCCTTCAGC TCCTAAGGGT CTGAACTCAA ATACTGTCAG CACTTCTCCT
ACTAAGTCAA ATGTAGAGCA GTTGGTTGCT CCGACTACTT CAACTTCAAT CTCAAATACA
AGTGCTAATT CAAATTCTGC GGCCACCTCA GATTCCATTC CTACTTCTGT AAGCGGATGT
TATTGCTGTG GAACTCTTCT CACATACCCT ACAAAAGCTT CTAAGTTCAG ATGTTCAGTC
TGTAACACTA CCAACATTCT CGCTGTAGCT CCCGAAAATT CTGCAGAAGG CAGCAATGAA
GCTGTTCACA TAATTTCGTA CGATTACGTA AAAAAGCAAG TAGAGAAATG CTTGAAATAC
TTGAACCAGT CCCTGGATAA GTCAATTCAC GAAGTGTTCG AACCATTGTC TGATTACCTA
TACGATGCAT TCAAAAACTA TCATATTTTA TCGAAGTCGT TCAAAACTCG TAGATCTAGC
CAAAATCAGC ATTACCACAC TTCCAAGATC AACTATGAAG AGATCCACAA TACCTTCTTA
CTCTTACTGA AATTGCCTAC TAAAAGACCT TTGTACAATG CCCTTAGAGG AGCTTCTCAC
TTGCTAAAGA GAGTCTATGT ATTTCCAAAA GGCAACGATG CCAGTTCCTA TGTCTGGGTA
TTGATTTTGA TGGAAATTCC CTTCCTTTCA AGATCGCTTC TATCTCCTGG AGACGATTCT
AAAGCTAAGT CCATGATAGA TGTGCCTGAA ATTAAAGGAT TATGCTATGA TATCTTGAAG
CGTTGTATAG GGATTTTGGC TTGCATAGAA TCCGTAGGTG CCATCAACTA TATAACCAGT
TGGTACGCCA ATCTTCCCAC TGCTGAATTC GCCAAAAAGG TTGATCTTCT CAATCTCTAT
ATCACCTTCC ATTTAAAGAA ATACTTCTAT ATTGCAAACA ATCCGCACTT GCTTAGAAGA
ACGTCTTCCA CTGCTGCCTA TAATGCCAGC ACTAGCGGGT CTCGGACTGA AGATAGCCAT
CCCACGGATC GTGAGTACTC TGAAAATGTT CATATTAAAG AAGAAATCGA TGCCATGAAC
CAGGAAACCC CAAATTTCAC AAATCAATTG GCATTACCCA CTTCGTATTT GGGCTCATTT
CCAGCTCGTA GAAATTCTAA AAAGAATCAG CTGCAAGAAG CAAAGATCAA GATATACCAG
TATGGAAATG ATTGGCATAT TAAGACGGCT GCAATCCTGT TGTCTTTCTA TCTATGTGCA
AATACTTACA GAGTAGAAAA GGTTTCTATA GCTTCGTTCT ACAACTCTTT GGTAGACTTT
GTCAATATCA AATTGGACTT TGATTCATGG CAGACCAATA AGAAATCGAA ATTCAACTCC
TCTTCAGGTG AGAATGACTT GCAACAGGTT ATAGATTATA TTAATGGAAG TACACGTGGC
AGTACACTTC ATGAAAATGC TTCATACTAC TTTTGTCAAT ACCCATTTTT GATTACTTTG
GGAGGTAAAA TCTCAATTTT GGAGTACGAA GCTCGAAGGC AGATGGAACG GAAAGCAGAA
GAAGCCTTTA TCAACTCCTT GGACAAACGT GTTGCCCTTG ATATTTACTT CAAGGTTAAA
GTCAGAAGAG AAAACATCGT GCAAGATTCG ATTTCCGCTA TCAAGAACAA CAGCAATAAC
CTCAAGAAAA GTTTGCGAGT TCAGTTCGTA AATGAACCTG GTGTGGATGT AGGTGGGTTG
AAAAAGGAAT GGTTCTTACT TTTGACCAGA GCATTGTTCA ATCCACAGGC AGGGATGGTT
TACAATATTG AAGACTCCAA CTACTTGTGG TTCAATCTAG TGCCCATAGA AAACTTTGAA
ATGTACTATT TGCTAGGTGC TGTATTGGGT TTAGCCATTT ATAATTCCAC TATTTTAGAT
CTTCACTTCC CAATGGCACT CTACAAGATT CTTCTCGATA AGCCTGTTGG CTTGGATGAT
TACAAGCAGT TGTTTCCTGT GTCGTATGGT AATTTGATGA AGCTCAAGAA ATACTCAACA
GAAGAGCTAT TGGCATTGGA TCTCACTTTT GAAGTTTCGT ATCAGGATTT ATTTGGAAAG
ACGTATTCGG CTGAATTGAT CAAGGATGGT AGGAAAATAT TTGTCACTGC TGAGACTCGT
AAATCATATA TTGAGAAATA CACTCAGTTC TTTTTGCAAG AAGGAATCAA GAAACAAATA
ACAGCTTTTT CCAGTGGATT CAAGAATGTT ATTGGTGGCA ATGGACTTTC TCTTTTCCTC
CCAGAAGAGA TTCAGTTGTT GCTATGTGGA AGTGAAGAAG GTGGTATAGA TGTTGACGTC
TTGAAATCAG TGACAAAATA CGTTGGTTGG AAAACGCCGG ATGATGGTGC TGATTCAACT
GTAGTTCAAT GGTTCTGGGA GTACATGTGC GAAATTAACA CCCAGGAACG GAAACGTCTA
CTCATGTTTG TTACCGGCTC CGATAGAGTT CCTGCAACAG GGATTCAAAA CCTAAGCTTC
AAAATCAGTA GCCAGGGTAA GGATAGCAAC AGACTTCCTG TTGCACATAC GTGTTTCAAC
GAGTTAGGCT TATATAATTA TAGTTCTAAG GAAAAGTTGG TCGACAAACT TGTTACAGCG
GTCAATGAGA GCGCAGGGTT TGGGTTAAAA TAG
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| Protein sequence | MLRRKSSVVA QNQNLPRNQN HNQSHNQINN AEQNTNSSNS SQISSTIASE PRSTPWRIKD
FLKLPSAPKG LNSNTVSTSP TKSNVEQLVA PTTSTSISNT SANSNSAATS DSIPTSVSGC
YCCGTLLTYP TKASKFRCSV CNTTNILAVA PENSAEGSNE AVHIISYDYV KKQVEKCLKY
LNQSLDKSIH EVFEPLSDYL YDAFKNYHIL SKSFKTRRSS QNQHYHTSKI NYEEIHNTFL
LLLKLPTKRP LYNALRGASH LLKRVYVFPK GNDASSYVWV LILMEIPFLS RSLLSPGDDS
KAKSMIDVPE IKGLCYDILK RCIGILACIE SVGAINYITS WYANLPTAEF AKKVDLLNLY
ITFHLKKYFY IANNPHLLRR TSSTAAYNAS TSGSRTEDSH PTDREYSENV HIKEEIDAMN
QETPNFTNQL ALPTSYLGSF PARRNSKKNQ LQEAKIKIYQ YGNDWHIKTA AILLSFYLCA
NTYRVEKVSI ASFYNSLVDF VNIKLDFDSW QTNKKSKFNS SSGENDLQQV IDYINGSTRG
STLHENASYY FCQYPFLITL GGKISILEYE ARRQMERKAE EAFINSLDKR VALDIYFKVK
VRRENIVQDS ISAIKNNSNN LKKSLRVQFV NEPGVDVGGL KKEWFLLLTR ALFNPQAGMV
YNIEDSNYLW FNLVPIENFE MYYLLGAVLG LAIYNSTILD LHFPMALYKI LLDKPVGLDD
YKQLFPVSYG NLMKLKKYST EELLALDLTF EVSYQDLFGK TYSAELIKDG RKIFVTAETR
KSYIEKYTQF FLQEGIKKQI TAFSSGFKNV IGGNGLSLFL PEEIQLLLCG SEEGGIDVDV
LKSVTKYVGW KTPDDGADST VVQWFWEYMC EINTQERKRL LMFVTGSDRV PATGIQNLSF
KISSQGKDSN RLPVAHTCFN ELGLYNYSSK EKLVDKLVTA VNESAGFGLK
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