| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_66598 |
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| Symbol | NDE1 |
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| ID | 4851691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 2560159 |
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| End bp | 2562116 |
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| Gene Length | 1958 bp |
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| Protein Length | 557 aa |
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| Translation table | |
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| GC content | 45% |
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| IMG OID | 640393399 |
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| Product | NADH dehydrogenase |
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| Protein accession | XP_001386827 |
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| Protein GI | 126275277 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1252] NADH dehydrogenase, FAD-containing subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0822718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TGAATAGCCG CTGGTAAAAC CGCAAACTTC TTTCCAAAAT TTGAATTTTG CTTTCGATTT
CGATTTTGAT TTTTCAATTT TGACTTGCTT CTTCCAGACT TCCTATTCTG TTAGAATTTC
GCTGACATCA CTGTAGGCTA GCATCTCAAT TGACATGTTT AGAACCGGTG CCAGACGTCT
TCTCAGCTCT TCGACCAGGA TCCTCAACCA GTCCTCGGCT CCTCAAGCTA TCAAGGTCCA
ACAAAAGGGC TTTTTCGCCA AAACATGGCG CTACACTAAG CTCACGACCC TTTTGGCTGT
TGCTGGATCT GTTGGTTTTG TCGGCTACAA GGTCTACAAC GAATCGCACC CTGCCGACCA
AATCAAGCAG GTTCCAGAAT TCGAAACCGG CCAGAAAAAG AAAACCTTGG TCATCTTGGG
TTCCGGCTGG GGCTCCATCT CGTTGTTGAA GAACTTGGAC ACGACTTTGT ACAATGTCGT
TGTTGTCTCT CCTAGAAACT ACTTCCTTTT CACTCCATTG TTACCTTCCT GCCCTACCGG
TACTGTTGAA TTGAGATCGA TTGTCGAACC AGTCAGATCC ATTACCAGAA GATCACCCGG
TGAAGTCATC TATTTGGAAG CTGAAGCCAC TTCTATTGAT CCAGTCAACA ACAGAGTCAC
TATTAAGCAA TCTACAACCG TTCACTCCGG CCACTCCGGT AAAGACACCT CGTCGTCGAA
GTCTACTGTT GCGGACTACA CTGGAATTGA TGAAATCACC ACCTCATTGA GCTATGATTA
CTTGGTTGTC GGTGTCGGTG CCCAACCCTC GACTTTTGGA ATCCCAGGTG TTGCTGAAAA
CTCCGTTTTC TTGAAAGAAG TCTCTGACTC TGTTACCATC AGAAAGAGAT TGATGGATGT
CATTGAAGCT GCCAACATTT TGCCTAAGGG TGACTCTGAG AGAAAGAGAT TATTGTCAAT
TGTCGTTTGT GGTGGTGGTC CAACTGGTGT TGAAGTTGCC GGTGAATTGC AGGACTACAT
CGACCAGGAC TTGAAGAAAT GGATGCCTGA AGTAGCTGAC GAATTGAAGG TTACCTTGGT
TGAAGCTTTG CCAAACGTAT TGAACATGTT CAACGCTAAG TTGGTTGAGT ACACCAAGGA
AGTATTTGCT GAAACCAACA TCATCTTGAG AACTAACACT ATGGTCAAGA AGGTGAGCGA
CAAGAACGTT CATGCTTCGC ACAAATTGAA GGACGGATCC ACTGAAAGCG TAGAAATCCC
ATATGGTCTC TTGATCTGGG CTACTGGTAA CGCACCTAGA GACATCACCC GTGACTTGAT
ATCTAAGGTC GACGAACAGA AGAACGCCAG AAGAGGATTG TTGGTTGACG AAAGAATGTT
ACTTGATGGT ACCGACAACA TCTTTGCTCT TGGTGACTGT ACCTTTACCA AATACGCTCC
TACTGCCCAA GTCGCTTTCC AGGAAGGTAT CTTTTTGGCT AAGCACTTTG CCAAATTGCA
CGAACTCGAG TCCCTCAAGT ACACCTTAGC CAACCCTAAG CCTACTGACA ACACCGATAG
ATTGACCAAG AAGTTGACCA AGTTGGAACA AAAGTTGCCT GTCTTCCAGT ACAATCACCA
GGGTTCCTTA GCTTACATTG GTTCTGAAAG AGCCGTCGCT GACTTGGTGT GGGGTGACTG
GTCAAACATC ACCTCTGGTG GTTCTTTCAC CTACTTGTTC TGGAGATCGG CTTACATCTA
CATGTGTCTT TCTGTCAAGA ACCAGATCTT GGTCTGTTTC GATTGGGTCA AGGTCTCTTT
GTTCGGCAGA GACTGTTCCA AGGAATAGAC GCTCACTCTC CTCCCCTTTT CATTTCCTAT
AGCCCTATTA CAACTATGTA TATTTAGGTT CACTAATATT ATTTATTCGT TATTCAATCT
ACTCAATACA TAAAGAAGAA TAAGAATCCT AGACTGTT
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| Protein sequence | MFRTGARRLL SSSTRILNQS SAPQAIKVQQ KGFFAKTWRY TKLTTLLAVA GSVGFVGYKV
YNESHPADQI KQVPEFETGQ KKKTLVILGS GWGSISLLKN LDTTLYNVVV VSPRNYFLFT
PLLPSCPTGT VELRSIVEPV RSITRRSPGE VIYLEAEATS IDPVNNRVTI KQSTTVHSGH
SGKDTSSSKS TVADYTGIDE ITTSLSYDYL VVGVGAQPST FGIPGVAENS VFLKEVSDSV
TIRKRLMDVI EAANILPKGD SERKRLLSIV VCGGGPTGVE VAGELQDYID QDLKKWMPEV
ADELKVTLVE ALPNVLNMFN AKLVEYTKEV FAETNIILRT NTMVKKVSDK NVHASHKLKD
GSTESVEIPY GLLIWATGNA PRDITRDLIS KVDEQKNARR GLLVDERMLL DGTDNIFALG
DCTFTKYAPT AQVAFQEGIF LAKHFAKLHE LESLKYTLAN PKPTDNTDRL TKKLTKLEQK
LPVFQYNHQG SLAYIGSERA VADLVWGDWS NITSGGSFTY LFWRSAYIYM CLSVKNQILV
CFDWVKVSLF GRDCSKE
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