| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_66451 |
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| Symbol | MDH1 |
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| ID | 4851338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 1539726 |
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| End bp | 1540989 |
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| Gene Length | 1264 bp |
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| Protein Length | 332 aa |
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| Translation table | |
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| GC content | 48% |
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| IMG OID | 640393046 |
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| Product | mitochondrial malate dehydrogenase |
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| Protein accession | XP_001387939 |
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| Protein GI | 126274379 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0039] Malate/lactate dehydrogenases |
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| TIGRFAM ID | [TIGR01772] malate dehydrogenase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.390905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATTCTCCACT ACTCCAGCAA TGCTCTCTAA AATCGCTACC AGATCATTCT CTTCTACTGC
TGCCAACGCA CACAAGGTCG CCGTCTTGGG TGCCGGTGGT GGTATCGGTC AACCTCTTTC
CCTCTTGTTG AAGTTGAACC ACAAGGTCAC CGACTTGGCC TTGTACGACT TGAGAGGTGC
TCCAGGTGTG GCTGCTGACG TTTCACACGT GCCAACCAAC TCTACCGTCA AGGGCTACAA
CCCAGACCAA TTGGCCGAAG CCTTGACCGG TGCTGACGTC ATTGTCATCC CAGCCGGTGT
CCCAAGAAAG CCAGGTATGA CTAGAGACGA CTTGTTCAAC ACCAACGCCT CCATTGTCAG
AGACTTGGCC AAGGCTGCTG CTGAGAACGC TCCTAACGCT GCTGTTCTTG TTATCTCCAA
CCCAGTCAAC TCCACTGTCC CAATTGTGGC TGAAGTATTC AAGTCCAAGG GCGTTTACAA
CCCAAAGAAG CTTTTCGGTG TAACCACTTT GGACGTGTTG AGAGCCTCTA GATTTGTTTC
CGAAATTGCC GGAACCAACC CTGTCAACGA AAAGGTCACC GTTGTCGGTG GTCACTCCGG
TATCACCATT GTGCCACTTT TGTCTCAAAC CAACCACAAG GACTTGGACA CTGAAACTAG
AGATGCATTG ATCCACAGAA TCCAATTCGG TGGTGACGAA GTCGTCCAAG CCAAGGATGG
TGCTGGTTCT GCCACTTTGT CTATGGCCCA GGCTGGTGCT AGATTTGCCG GTGCTGTTCT
TGACGGTTTG TCCGGCGAAA AGGATGTCAT TGAGCCATCT TTCGTCGACT CCCCATTGTT
CAAGAGTGAA GGTGTTGAAT TCTTCTCTTC CAAGGTCACC TTGGGCGTTG AAGGTGTCAA
GACCGTCCAC CCATTGGGCG AATTGTCCAA CCACGAAGAA GAATTGGTCA AGACCGCTAA
GGAGACCTTG ATCCTGAACA TCAAGAAGGG TGTTGAATTC GTCAAGCAGA ACCCATAAGT
AGAGTGCTGA TGTATATACG TTATGTCTCA TCTATGAATG AATGAGTATG AAAAAGCGAT
TGTAGAGTAG TTTGTCAAGC AGTATTGATC AAATTAGATT GTTAATTTTA ACTCAATTGA
GTCTATTCTG CTCGATTTAA TACAATACTT TCAAGCAAGT ACAAGCCATA GTCCAGAGAA
GTTGAGATCA AATTGATCTC ATAGATCACA CTTCTAGCCG AGGAAGAAGG AGAGAAAACT
GTCT
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| Protein sequence | MLSKIATRSF SSTAANAHKV AVLGAGGGIG QPLSLLLKLN HKVTDLALYD LRGAPGVAAD
VSHVPTNSTV KGYNPDQLAE ALTGADVIVI PAGVPRKPGM TRDDLFNTNA SIVRDLAKAA
AENAPNAAVL VISNPVNSTV PIVAEVFKSK GVYNPKKLFG VTTLDVLRAS RFVSEIAGTN
PVNEKVTVVG GHSGITIVPL LSQTNHKDLD TETRDALIHR IQFGGDEVVQ AKDGAGSATL
SMAQAGARFA GAVLDGLSGE KDVIEPSFVD SPLFKSEGVE FFSSKVTLGV EGVKTVHPLG
ELSNHEEELV KTAKETLILN IKKGVEFVKQ NP
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