| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_66251 |
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| Symbol | SDH1 |
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| ID | 4850855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 238044 |
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| End bp | 240642 |
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| Gene Length | 2599 bp |
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| Protein Length | 641 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640392563 |
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| Product | succinate dehydrogenase |
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| Protein accession | XP_001387286 |
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| Protein GI | 126273727 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CACGTTAGCA TTAATATTGT TTTTCTTTCT TCGGTTGTGT GTTGTCTGTC GCTGACGCTT
TCGTACTGAG TGTCTTTTAT CCGAATCCGA TTTTCATTTA TTCACTAACT GAAATCTATA
TCTATCATAT TATAGTAGAT TAGTTAGTTG TCTGATTGTG ATTGTTGCGT ATCATTCCAT
CTTACGTATC TCTTCACACT ATCATTGCTA CATACCGCTG ACTTCGGTTT CACATACCAT
CGTTGTCTAC CACTTAATTG CTGCAAACTT CGAGTAATTA GTTCATCATG TTGTCCTCGT
TCAGAAGCAA TTTCAAGACC TCTGCTATAC AGAGAAGATT CTTGTCGTCG ACAGCTGTCC
GTCACCAAGT CATTGGCTCC AACGTCAAGG GTGCTGATTT CAATGCTGCC AAATACATGA
GCCAAAAATA CCACGTGATC GACCACGAAT ACGACTGTGT TGTCGTTGGC GCTGGAGGTG
CTGGTTTGAG AGCAGCCTTT GGATTGGCTG AAGCTGGCTT CAAGACGGCT TGTATCTCGA
AGTTGTTCCC TACCAGATCG CACACAGTTG CTGCCCAGGG TGGTATCAAT GCCGCTTTGG
GAAACATGCA CAAGGACGAC TGGCACTGGC ACATGTACGA TACCGTTAAG GGTTCTGATT
GGTTGGGAGA CCAGGATGCC ATCCATTACA TGACAAAGGA GGCTCCTCAA TCGATCTACG
AGTTAGAGAA CTACGGTGTA CCATTCTCCC GTAACGAAGA AGGCAGAATC TACCAGAGAG
CTTTTGGTGG TCAATCGAAG GAGTATGGTA AAGGTGGTCA AGCCTACAGA ACTTGTGCTG
TAGCTGACAG AACCGGCCAT GCATTGTTAC ACTCCTTGTA CGGTCAATCT TTAAGACACG
ACACCCACTT CTTCATTGAG TTCTTTGCCA TGGACTTGAT GATGCAAGAC GGTGAATGTA
TTGGTGTCAT GGCTTACAAC CAGGAAGACG GTACCTTGCA CAGATTCAGA GCCCACAAGA
CCGTTATCGC CACTGGAGGT TACGGGAGAG CCTACTTCTC GTGTACATCG GCCCACACCT
GTACTGGTGA CGGTTATGCC ATGGTTTCCA GAGCTGGTTT GCCCTTAGAA GATTTGGAAT
TCGTTCAATT CCATCCTTCT GGTATCTACG GATCCGGATG TCTTATCACT GAGGGTGCCA
GAGGTGAAGG TGGTTTCTTG CTCAATTCTG AGGGTGAGAG ATTTATGGAA CGTTACGCTC
CATCGGCCAA GGATTTGGCT TCAAGAGATG TCGTTTCCAG AGCTATCACC ATGGAAATTA
ACGAAGGCAG AGGTGTAGGT CCAAAGAAGG ATCACATGTA CTTGCAATTG TCGCACATTC
CTGCTGCTGT GTTGAAGGAA AGATTACCTG GTATTTCTGA GACTGCTCAT ATTTTTGCTG
GTGTCGATGT TACCAAGGAA CCTATTCCTA TCTTGCCTAC TGTCCATTAC AATATGGGAG
GTATCCCTAC CAAGTGGAAC GGTGAGGTTC TCAAGAAGAA TGAAAAGGGA GAAGACGAAG
TTGTTCCAGG TTTGTTGGCC TGTGGTGAAG CTGCTTGTGC TTCTGTTCAT GGTGCCAACA
GATTGGGTGC TAACTCTTTA TTGGATTTGG TTGTTTTTGG TAGAGCTGTT TCTCACACCA
TCAGAGACTC TTTGACCCCA GGCGCTCCAC ACAAGCCTGC TCCTAAGGAT ATTGGTTACG
AATCAATTGC TAACTTGGAC AAATTGAGAA ACGCTACTGG TTCCAAGACT ACTGCTCAAA
TTAGAGATGA CATGCAACAC ACCATGCAAA GAGGTTGTGC TGTTTTCAGA ACCCAAGAGA
CTTTGGACAA GTGTGTAGAA CACATTACTG AAGTCGACAA GTCGTTTGCT GATGTTAAGA
CTACTGACCG TTCTATGATC TGGAACTCCG ATTTGGTAGA AACCTTGGAA TTGCAGAACT
TGTTGACTTG TGCTACTCAA ACCGCCAAGT CTGCTTCTGC CAGAAAGGAA TCCAGAGGTG
CCCATGCCAG AGACGATTAC CCTAGCAGAG ACGATGAGAA CTGGAGAGTG CACACCTTGT
CTTACCAGAC CGCTTCTGGA GAAGAAGTTA AGTTGGACTA CAGAGATGTC ATCAAGACCA
CTATGGATGA AAACGACTGT AAGCCTGTTC CTCCAGCTGT CCGTGTTTAT TAAGCGCAGA
TATTGTTATA GATAAGGTTG ATAGGATAAG ATCTAAAGAT GGATAGCAAA TGTCTGTAAG
ATTATTCAAG ATGATGATTA GTCTTTTAGC TTATGCTTAA CTATCATTTC AAGCTTATCT
TAGGTAGCTA CATTTAGTAC GCCTATAGGT ATCTACTTTA GTGCCTATAC ATAGTCACTA
AGACATTAAG GGCCATTTGA CTGAACTTTA CCTCACGTGG CTCTTGTATT TATTTTGAAC
TCATTCTATT TTCATATGTT GTTGAACGTT CGTATTGCTC TAAAATCTTT GCATATACTC
CTGGAGTTGG GTCCAGCCCT CGGTGGTTGG TTTTGGCTGC TGTTATTTAT TTATTTTCAT
CAATGCACGA ACACTAAAG
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| Protein sequence | MLSSFRSNFK TSAIQRRFLS STAVRHQVIG SNVKGADFNA AKYMSQKYHV IDHEYDCVVV
GAGGAGLRAA FGLAEAGFKT ACISKLFPTR SHTVAAQGGI NAALGNMHKD DWHWHMYDTV
KGSDWLGDQD AIHYMTKEAP QSIYELENYG VPFSRNEEGR IYQRAFGGQS KEYGKGGQAY
RTCAVADRTG HALLHSLYGQ SLRHDTHFFI EFFAMDLMMQ DGECIGVMAY NQEDGTLHRF
RAHKTVIATG GYGRAYFSCT SAHTCTGDGY AMVSRAGLPL EDLEFVQFHP SGIYGSGCLI
TEGARGEGGF LLNSEGERFM ERYAPSAKDL ASRDVVSRAI TMEINEGRGV GPKKDHMYLQ
LSHIPAAVLK ERLPGISETA HIFAGVDVTK EPIPILPTVH YNMGGIPTKW NGEVLKKNEK
GEDEVVPGLL ACGEAACASV HGANRLGANS LLDLVVFGRA VSHTIRDSLT PGAPHKPAPK
DIGYESIANL DKLRNATGSK TTAQIRDDMQ HTMQRGCAVF RTQETLDKCV EHITEVDKSF
ADVKTTDRSM IWNSDLVETL ELQNLLTCAT QTAKSASARK ESRGAHARDD YPSRDDENWR
VHTLSYQTAS GEEVKLDYRD VIKTTMDEND CKPVPPAVRV Y
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