| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_65073 |
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| Symbol | PUP1 |
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| ID | 4851978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 3345720 |
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| End bp | 3346852 |
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| Gene Length | 1133 bp |
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| Protein Length | 267 aa |
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| Translation table | |
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| GC content | 42% |
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| IMG OID | 640393686 |
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| Product | 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 |
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| Protein accession | XP_001386964 |
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| Protein GI | 126276195 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0638] 20S proteasome, alpha and beta subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.197238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | AGAACACAAG CCTATTGGTT GAAACCGGTC AATTCTAACC TCTACTTATC GCTGATTCAC
ATAGAAAAGA CTGCAATAAC TTCCAATAGA GTCAGACGGA TCAATACATC AATTTCGTTG
ACATTGAATT AATCATTGAA TATCACCGAA TCCCGATCAA CCTCGTTTAA ACCTCATATT
AATCACAAAT TGTATTGAAT TGAGAGTAGA TTTTTCATTC ACGACTTCAA ACCATTACAA
ATTCAACCGT TGAGCTCATA TAGAAGTCAA CAATTGAAAC TTAAAACAAT AGATTTAATC
AAATCATTAA CAAATTATCA TAACATACAA TGCCTGGCTT GAACTTCGAC AACTACCAGA
GAAACTCGTA TCTCACCACT AAGGGTTACG GAACTCCCAA GGCTACCTCT ACTGGTACAA
CTATTGTAGG CTGTAAGTTT AAAGGAGGGG TGGTGATTGC TGCTGATACT CGTGCTACGG
CCGGAAGCAT CGTGGCCGAT AAGAACTGTG AGAAATTACA TAGACTAGCA CCCAAGATCT
GGTGTGCTGG TGCCGGTACA GCCGCTGATA CTGAGATGGT AACTCAATTG ATAGCTTCAA
ACTTGGAGTT GCACGGACTT TACCAGAATA GGCAACCCCG AGTCATCACC GCTTTAACGA
TGTTAAAGCA ACACTTGTTC AAGTACCAGG GCCATTTGGG TGCCTATTTG ATTGTAGCTG
GTGTAGATCC AACTGGCGCT CATTTGTTGT CGGTACAAGC TCACGGTTCT ACCGATATCG
GCAAGTACCA GTCGTTGGGT TCTGGTTCGT TGGCAGCCAT GGCTGTATTG GAAACTAATT
TCAAGGAAGA CATGACCAAG GAAGAGGCCA TCAAGTTATG TGCAGATGCT ATTGAGCTGG
GTATCTGGAA TGATTTGGGT TCCGGTTCGA ATGTAGACAT ATGTGTGATG GAAGTAGGCA
AAGATGCTGA ATTGTACAGA AACTACTTGA CTCCAAATGT CAGATCAGAG AAGGCAAGAT
CGTACAAGTT TGCTAGAGGA TCTACTGCTG TGTTGAGAGA AACTGTACGT GATATTTTGG
ATGTAGAGGA AACGGTTGTC ACATTTGGTG ATGCTATGGA GGTGGATGCA TAG
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| Protein sequence | MPGLNFDNYQ RNSYLTTKGY GTPKATSTGT TIVGCKFKGG VVIAADTRAT AGSIVADKNC
EKLHRLAPKI WCAGAGTAAD TEMVTQLIAS NLELHGLYQN RQPRVITALT MLKQHLFKYQ
GHLGAYLIVA GVDPTGAHLL SVQAHGSTDI GKYQSLGSGS LAAMAVLETN FKEDMTKEEA
IKLCADAIEL GIWNDLGSGS NVDICVMEVG KDAELYRNYL TPNVRSEKAR SYKFARGSTA
VLRETVRDIL DVEETVVTFG DAMEVDA
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