Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_64832 |
Symbol | CBF5 |
ID | 4851096 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | - |
Start bp | 918375 |
End bp | 919988 |
Gene Length | 1614 bp |
Protein Length | 475 aa |
Translation table | |
GC content | 45% |
IMG OID | 640392804 |
Product | nucleolar pseuduridine synthase and putative microtubule binding protein |
Protein accession | XP_001387815 |
Protein GI | 126274082 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00431] tRNA pseudouridine 55 synthase [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATTCGTAGAA CACCACCACC ATGTCCGACG AATACTTCAT CAAGCCAGAG GCTGTCTCTC CATCTAACGA CACCTCCGAG TGGCCTTTGT TGTTGAAGAA CTTCGACAAG CTTCTTGTGA GATCTGGACA CTATACTCCC ATTCCTTCAG GCTCTTCTCC CTTGAAGAGA GACATCAAGT CATACATCTC GTCTGGTGTA ATTAACTTGG ACAAGCCTTC CAACCCATCT TCCCACGAGG TTGTTGCATG GATTAAGCGT ATCTTGCGTT CGGAAAAGAC TGGTCACTCT GGTACTTTGG ATCCCAAAGT CACAGGATGT CTTATTGTCT GTATCGACAG AGCTACCAGA TTGGTCAAGT CCCAGCAGGG TGCTGGTAAG GAGTATGTGT GTATAGTGAG ATTGCACGAA GAATTGAAGG ATGCTAAAGA TTTGGGACGT TCTCTTGAAA ACTTGACCGG TGCTCTTTTC CAAAGACCAC CATTGATTTC TGCTGTTAAG AGACAGTTGA GAGTGAGAAC TATCTACGAC TCGAACTTGA TTGAGTTCGA CAACAAACGT GGTTTGGGTG TCTTTTGGGC CTCTTGTGAA GCAGGAACCT ACATGAGAAC GTTGTGTGTC CATTTAGGAA TGTTGTTGGG TGTTGGAGGT CACATGCAAG AGTTGCGTCG TGTTCGTTCG GGTGCTCTTG GAGAGAATGA CAACTTGGTC ACCTTGCACG ATGTCTTGGA TGCTCAATAC GTCTATGACA ACACACGTGA CGAGTCTTAC TTGAGAAAGA TTATTCAGCC ATTGGAAACT CTCTTGGTAG GCTACAAGCG TATTGTTGTG AAGGACTCAG CTGTCAACTC TGTCTGTTAT GGTGCAAAGT TGATGATCCC TGGTTTGTTG CGTTACGAGG AGGGCATTGA ATTATATGAC GAGGTCGTCT TAATGACCAC CAAGGGTGAA GCCATTGCCA TTGGTATTGC CCAGATGACC ACTGTAGACT TGCAGGGCTG TGACCACGGT GTCGTCGCCA AGGTCAAGAG ATGTATCATG GAACGTGACA CCTACCCAAG AAGATGGGGA CTTGGCCCAG TGGCCCAAAA GAAGAAGCAA ATGAAGGCAG ATGGCAAGTT GGACAAATTT GGCAGAGCCA ATGAAAACAC TCCAGAGACC TGGAAGCAAG AATACAAGGA CCACGACGAA GAACCTGCCC CTGCTGTGCC TGCCTCCAAA TTGGTGGCTC CTGAAGTGCA ACTCCCAAAG AAGACCTTAA TCGAAGAAGT CGCTTCTGAA GAGGCTTCTG AAGCCGAAGA AAAGAAGGAG GACAAGAAGG AAAAGAAGGA GAAGAAGGAA AAGAAGGAGA AGAAGGACAA GAAGGAAAAG AAGGACAAGA AGGACAAGAA GAGAAAGGCT GAAGACGGTG AAGAAAAGGC CGAAAAGAAG AAGAAGGCCA AGAAGTAGTT GCATTTCATA TTACCATAAC CAACATCACA ATACCATCAT TCCATTCCCG TCGCAATGGT GTATTCTACA AGGTACTCAA CGCCGTTTGT TTTACCTTTA GCATTAGTTC TGTACATTTA ATTTTTCTAT ATATGATTTT AACCAATAAC TTTAGATGAC GTTG
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Protein sequence | MSDEYFIKPE AVSPSNDTSE WPLLLKNFDK LLVRSGHYTP IPSGSSPLKR DIKSYISSGV INLDKPSNPS SHEVVAWIKR ILRSEKTGHS GTLDPKVTGC LIVCIDRATR LVKSQQGAGK EYVCIVRLHE ELKDAKDLGR SLENLTGALF QRPPLISAVK RQLRVRTIYD SNLIEFDNKR GLGVFWASCE AGTYMRTLCV HLGMLLGVGG HMQELRRVRS GALGENDNLV TLHDVLDAQY VYDNTRDESY LRKIIQPLET LLVGYKRIVV KDSAVNSVCY GAKLMIPGLL RYEEGIELYD EVVLMTTKGE AIAIGIAQMT TVDLQGCDHG VVAKVKRCIM ERDTYPRRWG LGPVAQKKKQ MKADGKLDKF GRANENTPET WKQEYKDHDE EPAPAVPASK LVAPEVQLPK KTLIEEVASE EASEAEEKKE DKKEKKEKKE KKEKKDKKEK KDKKDKKRKA EDGEEKAEKK KKAKK
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