Gene PICST_53948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_53948 
SymbolOSM2 
ID4851951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp3283741 
End bp3285720 
Gene Length1980 bp 
Protein Length659 aa 
Translation table 
GC content46% 
IMG OID640393659 
ProductOsmotic growth protein 
Protein accessionXP_001386951 
Protein GI126276120 
COG category[C] Energy production and conversion
[I] Lipid transport and metabolism 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
[COG5274] Cytochrome b involved in lipid metabolism 
TIGRFAM ID[TIGR01813] flavocytochrome c 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.621591 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCTC CAAATACTCT TCCCCGGAAT CCTATCATCA TCGTTGGTGG TGGGTTGGCG 
GGACTCTCTG CTGCGCACCA GACATATCTC CGAGGAGCCA ATGTGATTCT CTTGGACAAG
CAGGGGTTTC TCAGTGGAAA TAGTGGAAAA GCTACATCCG GGATCAACGG AGCCTTGACG
AGGACACAGG TTGATCTCGA AATCAAGGAC TCGGTGCAAC AGTTCTACGA CGACACTTTG
GCTACTGCTA AGGACAGGGC CAGACCAGAC TTGATCAAGG TGTTAACTTA CCATTCCGCA
GATGCCGTAC ATTGGCTCCA GGAAGTGTTT GACTTGGATT TGACAGTTGT GTCGAGATTG
GGGGGTCATT CCCAGCCCAG AACCCACAGA GGAAAAGACT CAAAGTTCCC AGGCATGGCC
ATCACGTATC GGTTGTTGGA AACCTTGGAA GACTTAGCCT TGGCTGAACC CCACAGGGTG
TTGATCTTGA AGAACTGTCA GGTGATCGAC TTGGTGAAAC AGGACCACAA GGTGACTGGG
GTGAAGTACA AGAACTTGCT TGACAAGACG AAACACGAGT TGACTGGTCC TGTGATCATG
AGTACAGGTG GGTATGCCGC TGACTTCACC AAGAACTCGC TCTTGAAAAA GTACAGACCT
GATATTATTG ACTTACCTTC TACGAATGGA AACCATGCCA CTGGTGATGG CCAGAAGATC
ATTATGAAGA ACAAAGGTGT GGGAACCGAC TTAGACAAAG TACAAGTGCA TCCTACTGGC
TTGATTGACT ATAACGACAC CGACACCATT CTGGGTAAGA AGGTTCCCCG TTTCTTATTT
CTAGGAGCTG AGGCACTTCG TGGTGAAGGT GGGATCATCT TGAATGCTAA AGGCGAACGT
TTTGTGGACG AGTTGGGACC CAGAGACTAC GTCAGTGGTG AAATGGAAAA ACAATTGAAG
TTGGGCAATG GGCCATTAAG ATTGGTTTTG AATGAAGCCA GTGAAAAGAA CTTGGAGTTC
CATGTCAAGC ACTACAAGGC CAGAAACTTG ATGAAGACTA TTTCTGGAAA GCAGCTACTT
GCTGATTTGG GGTTGTCTGG ACATCCCGAA AAGTTGGAAC TGGTATTTGC TACTTACAAC
AAAGCTGCTC GTGGCGAGAT CAAAGATCCA TTTGGGAAGA AGTTCTTCCC AGCCACTCCC
TTCGAGTACA ATCCTGATGC CAGCTACCAT GTCTCTTTCA TTACCAGAGT GTTGCATTTT
ACAATGGGAG GTGTTAGAAT CAACGATAAA GCTCAAGTAA TGTACCAAGT AGGAGAAGAC
GAATATGAAC CTTTTGAAGG CTTGTATGCT GCTGGAGAAT TGGCTGGAGG TATCCATGGT
CACAATAGAC TTGGAGGTTC TTCTCTCTTA GCGTGCGTAG TCTACGGAAG ATTAGCTGCT
GATCAAGCTA CCAGTTATTA CATGAACAAG TTGAGTGAAG GTCCTGTAGG ATCATCATCT
TTGAACAGAT TGCAAATGAT CAACTTACAC ATTGATCCAA ACAATCCACA GAAGGTCACC
ATAGAATGGG GCGAAGGCAA CCCTTCTACT GGAGATATTA ACTCTTCTTC TACTGCTACT
GCTGCTGCTA CTGCGACTTC TAATAGTAAT ACATCTACTA CCGCTCCTGC TGCTACTCCT
GCTGCTACTG CTACGGAAAA ATTTAAGCTG TTTGAGATCC CTGCCAAGGA GTTCACCTAC
GAAGATGTTG CTAAGCACAA TAAACGTGAA GACTGTTGGG TGGTGGTGAA GAACGTTGTC
TTGGATTTGA CTCCGTTCTT GAAGAACCAT CCTGGGGGAA TGGAGTCGAT CGTCAACTAC
GCGGGCAGAG ATGCTACAGA GAGCTTTGAG ATGTTGCACG AAGATAACTT CATTGAAAAG
TACACTCGAG ACTGTGTCTT GGGTAGAATC AAAGGCAAGA CCCCAGCATT GAACTTATAG
 
Protein sequence
MSSPNTLPRN PIIIVGGGLA GLSAAHQTYL RGANVILLDK QGFLSGNSGK ATSGINGALT 
RTQVDLEIKD SVQQFYDDTL ATAKDRARPD LIKVLTYHSA DAVHWLQEVF DLDLTVVSRL
GGHSQPRTHR GKDSKFPGMA ITYRLLETLE DLALAEPHRV LILKNCQVID LVKQDHKVTG
VKYKNLLDKT KHELTGPVIM STGGYAADFT KNSLLKKYRP DIIDLPSTNG NHATGDGQKI
IMKNKGVGTD LDKVQVHPTG LIDYNDTDTI LGKKVPRFLF LGAEALRGEG GIILNAKGER
FVDELGPRDY VSGEMEKQLK LGNGPLRLVL NEASEKNLEF HVKHYKARNL MKTISGKQLL
ADLGLSGHPE KLELVFATYN KAARGEIKDP FGKKFFPATP FEYNPDASYH VSFITRVLHF
TMGGVRINDK AQVMYQVGED EYEPFEGLYA AGELAGGIHG HNRLGGSSLL ACVVYGRLAA
DQATSYYMNK LSEGPVGSSS LNRLQMINLH IDPNNPQKVT IEWGEGNPST GDINSSSTAT
AAATATSNSN TSTTAPAATP AATATEKFKL FEIPAKEFTY EDVAKHNKRE DCWVVVKNVV
LDLTPFLKNH PGGMESIVNY AGRDATESFE MLHEDNFIEK YTRDCVLGRI KGKTPALNL