| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_53629 |
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| Symbol | RAD50 |
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| ID | 4851649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 2449962 |
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| End bp | 2453882 |
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| Gene Length | 3921 bp |
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| Protein Length | 1306 aa |
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| Translation table | |
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| GC content | 37% |
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| IMG OID | 640393357 |
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| Product | DNA repair protein |
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| Protein accession | XP_001386802 |
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| Protein GI | 126275152 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00606] rad50 |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.440366 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAGTC TCTTCAAGCT CTCGATCAAG GGTATCCGGT CGTTTGAGCC AGAAAATGAA
GAAACCATCC AATTTGGATT TCCTCTTACA TTGATCTGTG GCCAGAACGG TTGCGGTAAA
ACAACAATTA TAGAATGTCT CAAGTATGTC ACCACAGGAG ATCTTCCACC TAATTCCAAG
GGTGGGGCGT TTGTCAACGA CCCTAGTATT TCTGGTAGAC CTGTTGTGAC TGGTCAGATC
AAGTTAGCTT TTAGAAATGC CAATGGAAAA TCTATGATAG CTACTAGAAC TGTACAATTG
ACAAGGAAAC AGACTAGAGG TGCTTTTACC AATACGTTCA AGACTTTGGA AGGACAATTG
GCCACTATAG ATAAAGGAAA TAAAGTAAGT ATTTCAACAA AAAATTCGGA ACTAGATGCC
CAGACTCCGA TCTTTTTGGG TGCTTCTCCT GCTATCCTAG ACTACGTGCT CTTTTGTCAC
CAAGATGAAA GTTTGTGGCC CCTCAGTGAA GCTTCAGTGT TGAAAAAGAG GTTTGATGAT
ATATTTGAAG CTTCCAAGTT CACCAAAGTT CTTGACAACC TCAAAACTAT CAAGAAGGAC
ATGAGTACAG ACATAAAGCT AATTGAACAG AGTGTAAAGC ACCTCAATAT CGACAAGACG
AGAGCAAAGA AAATTGAAGA CAAGGTTCTA CAAATGAATG CTTCTGTAGA GAGTTATACT
GAACAAATTG GAGATATAAA TTTGAAAATA GAAGCGAAAG AAAAGGAAGC GGAGGATCTT
TTTGCATCTA ACCAGGAATT TCAAAAAACT TTGAGTACAT ATGAGTCGCT AAAGATCCAA
AAGAGAGGCG TAGAAGAACA AATAGGGAGA ATGAAAGATA ACATAGATTA TATCGATGAG
GCAACTGACG AAGAGTTACT TAGCATGGTG GATAGCTTCA ACGACAAGGC TAAGGAACTA
GAAGCTAACT TGAACGAATT ACAAGTTGCT TGTGAAAGTT ATGCAGACAG CATGAAAGAA
AAACAGACAG AATTGAACGA CTTGATTAGA TTAGATGGTA CTCTCAAAGC AAGGGAAGAT
GAGTATAACC AAAATATGAA CAAAATGGCT TCTTTGATCT CTGATAATGC CTCTGATGAC
AGCTTTCAAA GCTCCAGTTA CAATTCCAAG GAGATCGCAC GCTTCAAATC TGCCTTGGAA
GTCAAAAATA GACAACTAGA AGCAGATTTA AGGTTAACAT CAACACTGTT TAAGAATTCG
GAGGCCGACA AACAACAACT GATACAGTCG TTGCAAGATT CTATCACTAG AGAAGAACAA
CTCAAGGAAT ATAGTAACAA TGATATTCAG TCAACAAAAC AAAAATTGTC GACGTTTAAA
AAGAAGATCG AGATTTCTAA CAGTGATGAA AGTGAACTAA AGTTAAAGGA AGAAGAACTA
CAGTCCACCT TGGCAGCATT GGATGACAAA AAGAAGAAGA ATGAAGTTAA AACCTTGGAT
TCAAAGATTG AAGAAAAGAA TGAGTTGTTA TCCAAGTTGG AATTTGAAGT AGATGAATTG
TCAAAGAAAA TAACGACAAG TAACAAACAG TCAGAGATCA AAACCAGATT GAACATGTTA
AAAGAATCTC TAACGACAAA GACGAAATAT CTTGAAGATG TCTTGACAGC TACCAAGCCA
TCATTTAAGA AGGCAGTTGG GACAGACTTG GATCCTCAGT CTTGTGAGGC TGCCTTTGAA
GATGCTGCAG AGAAAGTCAG AATGGAGTTT GAAACTCAAC AGTCTAAAGT TGCTATCATC
TCTAGAGAAG CAGATTCGAC AATTGCTCTT GTCAAGTCGA TAAACACTTC GAAAGAAGAT
ATAATACAGA AAATCTCTGC TCTTAAGAAT GAGATTCTTG CTGTTATTGA TGAAAGTGAA
ATTGACCTGT ATGAAAGTGT AGTGGAGGAT TTGGAAGATA GTTATAGAAA TGTTCTAGAA
GATGTCAATA CTTCGGAAGT CACAAGACAA TTCAATATTA CCGCAATATC TATTGCTGAG
AAAGAACAGC ATTGTTTATT GTGTAAGAGA ACATTTGACT CTAGGGGATT GCAGAAATTT
ATTGACGAGC TCCAGCACAG TGTCAAGAAG GAAAAGATCA AGGAAACTGA AGACCAAGCT
CAAGAGATCA AGAAAGAATT GGAATCTGTG AAATCTATAA ATTCTCAAGT CTTATCTTAT
AGAGATTCTA TAAAGAGTTC CGTTGAAATT ATCAAAAGAC TAGATGACTT GAACGCGACT
TATGAAGAGC AGAAATTCGA TCTTGATGCG CATGAAGAAT TGCTAGAAGA GTCGCGTAAT
AAGAAAGATG AGGTTCTTAT GTTGCGAAAA TCATTAGGCG AAATTGTGAG ACTTAACGGT
GAAATTCTAG AATTGCAAAA TCAAGTCAAG GAAGTACTGG AAGAAATTGA TGGACTTGGT
TCAGTTGTGC TTTCCATTTC CGAGTTACAG AAATTACAAC AACTGAAGTC TTTACAAATC
AAGTCTATTA GGTTGGAGGT AACGGATGAT ACAGAAGCCA AACACGACAT TCAACGAGAA
ATTCAGAGAC TTGAAAACAA AGTTAAGGAC ACTCGATTGG CAATTAGCAA TTTGGAGAAA
TCTTTAGCCG ACATCAACAA CATCAAGAAT AGCATAAGCG AACTTGAAGA AAAAATACTT
CTGTTGGGGA CAACTCTTTC GAATACAAAA GAGAGGTTGA CAGAACTATA TGAGAACAGA
GATAAGCTTT CGAGTGAATT TGCTAATACA AAAGAAACGA ACAGGAATGT ATTAGATTCA
AAGCAGAAGG CTCTAAATGA CAGCAACGAA ATTGTGAGAG TGATCACTCA ACTATCTGCA
GCAATCAAGG ATTATGAAAC TCATGACATC AATAAGCTCA GGGAAAATTT ATCTGAGCAA
GAGAGAGTCA GGAAGGTGAT GGAGGCACTA GAAGACAAAA TGAAGGCTGT TCGTGATGAA
ATCAAGAATC TTGAGTCACA GATGATGAAT TTCAAAGATT CTAAACATCA TTATATTGCC
AATTTAGACT ACAGAGCGCA GTTGCGTAAA TTAGAAGAGA TAGATAATGA AATTGAGGCT
TTGGATATTG AAAACGCGCA GGCTCGAAAG GAAGAGTATC AAGAGAGGTC CAGAAGCTTA
AGGCAAGAGA TAACCAACCT AACTTCAGAG CATGCGGGAA AGATCGGAGA AGTTAAGCAG
ATCAAGGATC AAGTTAAAGG ATTGCAGAAA GAGCTTGAAA CAGATTTCAA GAATGTAAAT
GAAATATACC GTGCCGAATG GATAAAGCTT CAAACGAATA TGTTCATTTC TAATGATATT
CAGACGTATT CAAAAGCTCT TGACAATGCT ATTATGAAAT ATCATAGCAT CAAGATGGAA
GATATCAATA GGATATTGGG TGAATTGTGG TCACAAACTT ACAAAGGTTC GGACATATCT
ACTATTGCAA TCAAGAGTGA TGTCAATCTA CAATCCAAGG GTAACAGATC ATATAATTAT
AGAGTTGTTA TGTACAAGAA TAGCAATGAG TTGGATATGC GTGGTCGTTG TTCTGCTGGG
CAGAAGGTTC TTGCCAGTAT CTTAATTAGA TTGGCGCTTG CTGAGTGCTT TGGGGTCAAC
TGTGGAATCA TCGCACTTGA TGAGCCAACC ACAAATTTGG ATCATGAAAA TTCCGAGGCT
TTAGCTGAAG CACTTAATAA TATTATCGAA TACAGAAAAG CGCAGAGAAA CTTCCAATTA
ATTGTCATTA CACATGATGA AAACTTCTTG ACTCATATAA ATGGTGGCAA ATTCACAGAC
CATTTCTATC GCGTTCAAAG AGATGAACAG CAAAATTCTC GGATTTTCAG ATTACCAATC
AGCAAGATTC AAGAAGATTA A
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| Protein sequence | MSSLFKLSIK GIRSFEPENE ETIQFGFPLT LICGQNGCGK TTIIECLKYV TTGDLPPNSK
GGAFVNDPSI SGRPVVTGQI KLAFRNANGK SMIATRTVQL TRKQTRGAFT NTFKTLEGQL
ATIDKGNKVS ISTKNSELDA QTPIFLGASP AILDYVLFCH QDESLWPLSE ASVLKKRFDD
IFEASKFTKV LDNLKTIKKD MSTDIKLIEQ SVKHLNIDKT RAKKIEDKVL QMNASVESYT
EQIGDINLKI EAKEKEAEDL FASNQEFQKT LSTYESLKIQ KRGVEEQIGR MKDNIDYIDE
ATDEELLSMV DSFNDKAKEL EANLNELQVA CESYADSMKE KQTELNDLIR LDGTLKARED
EYNQNMNKMA SLISDNASDD SFQSSSYNSK EIARFKSALE VKNRQLEADL RLTSTLFKNS
EADKQQLIQS LQDSITREEQ LKEYSNNDIQ STKQKLSTFK KKIEISNSDE SELKLKEEEL
QSTLAALDDK KKKNEVKTLD SKIEEKNELL SKLEFEVDEL SKKITTSNKQ SEIKTRLNML
KESLTTKTKY LEDVLTATKP SFKKAVGTDL DPQSCEAAFE DAAEKVRMEF ETQQSKVAII
SREADSTIAL VKSINTSKED IIQKISALKN EILAVIDESE IDLYESVVED LEDSYRNVLE
DVNTSEVTRQ FNITAISIAE KEQHCLLCKR TFDSRGLQKF IDELQHSVKK EKIKETEDQA
QEIKKELESV KSINSQVLSY RDSIKSSVEI IKRLDDLNAT YEEQKFDLDA HEELLEESRN
KKDEVLMLRK SLGEIVRLNG EILELQNQVK EVLEEIDGLG SVVLSISELQ KLQQLKSLQI
KSIRLEVTDD TEAKHDIQRE IQRLENKVKD TRLAISNLEK SLADINNIKN SISELEEKIL
LLGTTLSNTK ERLTELYENR DKLSSEFANT KETNRNVLDS KQKALNDSNE IVRVITQLSA
AIKDYETHDI NKLRENLSEQ ERVRKVMEAL EDKMKAVRDE IKNLESQMMN FKDSKHHYIA
NLDYRAQLRK LEEIDNEIEA LDIENAQARK EEYQERSRSL RQEITNLTSE HAGKIGEVKQ
IKDQVKGLQK ELETDFKNVN EIYRAEWIKL QTNMFISNDI QTYSKALDNA IMKYHSIKME
DINRILGELW SQTYKGSDIS TIAIKSDVNL QSKGNRSYNY RVVMYKNSNE LDMRGRCSAG
QKVLASILIR LALAECFGVN CGIIALDEPT TNLDHENSEA LAEALNNIIE YRKAQRNFQL
IVITHDENFL THINGGKFTD HFYRVQRDEQ QNSRIFRLPI SKIQED
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