| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_53486 |
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| Symbol | SMF2 |
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| ID | 4851936 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 3237211 |
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| End bp | 3239364 |
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| Gene Length | 2154 bp |
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| Protein Length | 698 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640393644 |
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| Product | manganese ion transporter |
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| Protein accession | XP_001386943 |
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| Protein GI | 126276072 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1914] Mn2+ and Fe2+ transporters of the NRAMP family |
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| TIGRFAM ID | [TIGR01197] NRAMP (natural resistance-associated macrophage protein) metal ion transporters |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.392071 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATAC GAGAAACGTT CACCTTCAAG AAAGCTCTTC TGGTGCTAAA GACATATTCG
AGGTTCATTG GCCCTGGCCT AATGGTCAGT GTAGCGTACA TGGATCCCGG AAACTATTCC
ACTGCTGTAG CTGCTGGCTC GGCTTATAAA TATGACTTAC TTTTCCTGAT TTTTTTATCA
AACTGTCTAG CCATTTTCCT TCAGATATTA GCTGCTAAGC TTGGAGCCGT AACAGGACTC
GATTTGGCTG CAAATTGTAA AGCCAATTTC TCATTTAAAA CGAATTTATT TATCTACATT
TTGGCCGAAG TTGCCATCAT TGCTACCGAC TTGGCAGAAG TAGTTGGTAC GGCCATAGCA
TTGAACATCT TGTTCAATTT ACCCCTTTTT GCTGGGGTCA TCCTCACAGT CGTAGACGTA
CTAATTGTGT TGATGGCATA TAGGCCGAAA GGTCCGTTGC TTTTCATCCG GATTTTTGAG
TCGTTTGTAA CTGTCTTGGT GGCGGCAACT GTTGTCTGTT TTGCCATAGA ATTGCATCAA
GTCAGTCATG ATCCACTGAT TAATTTTTCA GTGGTAGAAG TCATGAAGGG CTTTTTGCCA
AATGAAAGCG TCGTAGATCT GTCTGATAGA AAAGGCGGAA ACGGACTTTT CTTGAGTTTG
GCTATTTTAG GAGCAACCGT GATGCCCCAC TCCTTGTACT TGGGATCAGG TTTGGTTCAG
GCCAGATTGA AGGATTTTGA CATCAAGCAT GGTTTTTACA GACCCTTTCA AAGAAGATCT
CTCAATGCTG AATCACCCCA AACTCAGACG GAAGAAGAAG AATTACATGG CACTGAATCT
TTAGCTGAAT CTGACTCAAT TACTCCATTG GCTACACCTT TGGTGAACCC ATTTGGTGGC
ATACTAAGAT TTGAAAAGGA TAATGATGTT GCAACTGTAG ACGATGATGA AGACGACAAC
TACCGTCCTT CCATTCATGC GATCGACGAC ACAATGAGCT ATACAATTGT GGAATTGGTA
ATTTCGTTAT TCACAGTCGC ACTTTTCGTC AATGCTGCTA TTTTGATTGT CGCTGGTGCC
ACTTTAAATG CCAATAAAAA ACATGAAAGA AGCTCCTTTG GGGGTTTTTC TAGGAGAGAT
GATGACGATG ATGGCACAGA TTCAGACTCA GACGACGACT ACGAGAACGC AGATTTATTT
ACCATCTACC ATTTGCTTTC AAAGCATTTG TCGCCTACGG CTGGGTTTGT GTTTGCATTA
GCGTTGTTGT GTTCCGGCCA AAGTGCTGGT GTAGTTTGTA CTTTGGCAGG TCAGATGGTC
TCTGAAGGTT TCTTGTCGTG GAGCTTACCT CCAGTGACGA GAAGATTGAT TACCAGAGGC
TTGGCCATTG CTCCATGTCT TGTTGTCGTA AGCATTGCCG GTCGCGAAGG TTTAGCCAAA
ACATTGAATG CCAGTCAAGT AGTTTTGTCG ATTCTTTTGC CAGTAGTCAG TGCCCCTCTT
ATTATCTTTA CTTGTTCAAA AGAAATCATG AAGGTACCTA TCTTTGTCAG AGACGGGGAT
GAAAATGTCG ATATTGTCTA CGAACAGCCG GAAGCTTCTA CTATCTTTGA CGATGACGAA
ATAACTCTAC CTGCCCCTGC TCCTGGCAAA CCGCGTAGAT TCAAAAGTAC AGAGCCTGCT
ATCCGCTTAC AAGATTTACG TAACTCACAT CCTTGCGCTG GTTGGGAAGA TGATGAGGAC
GAACATATGA ATCACGGAAG TGAAGAACAA CTGCACCTTC TCAGTCTGAA CAGCGCTGAT
GGAACTAATG CCAACGCTCC ATACCCTCGC CGTTTATCAG CTGTTGCTAT TCTGTCTACC
ATAAATAATG CTAGTATTAG AGAAGCAACT CCAGTCAAGA AATCGATGAG TACAAGTGAC
TCGAACAGTT TCAGCTCCTC TAGCGCTAAC ACCTCGACAA ATCCCACACC AAACCCTTTA
CCAGTGGAAA TCTACGAAGA TGCCGACCAC GAGCTCTTCA GAATCCAAGG CTACAAAGAC
TTCAGCAACA GCCCCTTGAC AGCTTTTGTT GCAATCTTGA TCTGGGGGTT TGTCACCTGC
TTAAACTTGT ACTTGATAGT CAGCATGATG TTGGGCTACG ATGTTCCTTT GTGA
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| Protein sequence | MSIRETFTFK KALLVLKTYS RFIGPGLMVS VAYMDPGNYS TAVAAGSAYK YDLLFLIFLS
NCLAIFLQIL AAKLGAVTGL DLAANCKANF SFKTNLFIYI LAEVAIIATD LAEVVGTAIA
LNILFNLPLF AGVILTVVDV LIVLMAYRPK GPLLFIRIFE SFVTVLVAAT VVCFAIELHQ
VSHDPLINFS VVEVMKGFLP NESVVDLSDR KGGNGLFLSL AILGATVMPH SLYLGSGLVQ
ARLKDFDIKH GFYRPFQRRS LNAESPQTQT EEEELHGTES LAESDSITPL ATPLVNPFGG
ILRFEKDNDV ATVDDDEDDN YRPSIHAIDD TMSYTIVELV ISLFTVALFV NAAILIVAGA
TLNANKKHER SSFGGFSRRD DDDDGTDSDS DDDYENADLF TIYHLLSKHL SPTAGFVFAL
ALLCSGQSAG VVCTLAGQMV SEGFLSWSLP PVTRRLITRG LAIAPCLVVV SIAGREGLAK
TLNASQVVLS ILLPVVSAPL IIFTCSKEIM KVPIFVRDGD ENVDIVYEQP EASTIFDDDE
ITLPAPAPGK PRRFKSTEPA IRLQDLRNSH PCAGWEDDED EHMNHGSEEQ LHLLSLNSAD
GTNANAPYPR RLSAKSMSTS DSNSFSSSSA NTSTNPTPNP LPVEIYEDAD HELFRIQGYK
DFSNSPLTAF VAILIWGFVT CLNLYLIVSM MLGYDVPL
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