| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_53355 |
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| Symbol | DBP5 |
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| ID | 4851640 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 2421811 |
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| End bp | 2423385 |
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| Gene Length | 1575 bp |
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| Protein Length | 500 aa |
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| Translation table | |
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| GC content | 42% |
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| IMG OID | 640393348 |
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| Product | RNA helicase required for poly(A+) mRNA export |
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| Protein accession | XP_001386798 |
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| Protein GI | 126275124 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.390425 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCTG AAAAGAGAGT TGAAGCAGAT GCTGCTGAGT TACTTTCTTC ACTTTCCTTG
GGAGAGAGTC CTGCAGAAAA AAAAGATGAA AAGACTGAAG AAGTGAAGAA AGAAGAAGCT
AAGTCTGAAG AACTCAACAA GGTTGTAGAG AAGACGGAAG AAAAGGTCAA GGAGGCAAAT
GCAGAGGTCA AGGAGACTAA AGAAGAGGTC AAGAATACTG AAGAAGTGAA GAAAGAGGAC
GCTAAGCCCG AAGAGCTCAA GGAGGTTGTA GAAAAGACAG AAGAAAAGGG CAAGGAAGAA
AATGAAGAAC CAAAAACTAA CTTGATCCAA TCGACTTATG AAGTAAAAGT CAAATTGGCT
GACATACAAG CAGATCCCAA TTCTCCATTG TTTTCAGTAA AATCCTTTGA AGAGTTGGGT
TTGACTCCAG AATTGTTAAA GGGGTTGTAT GCCATGAAAT TCAACAAGCC CTCCAAAATT
CAAGAAAAAG CATTGCCGTT ATTAATCTCC AATCCTCCCA GAAATATGAT TGGTCAATCC
CAATCAGGTA CTGGTAAGAC TGCCGCTTTT TCGTTGACTA TGTTGTCCAG AGTGGATCCC
AAGGTGCCTC TGACACAGTG TCTCTGCTTG GCTCCTACGA GAGAGTTGGC CAGACAAACT
TTGGAAGTAA TTTCTACTAT GGGAAAATTC ACCAACATCA CCACGCAGCT TATTGTACCA
GATGCTTTAC CGAGAGGTCT GTCCACCAAT GCCCATATTA TAGTAGGTAC ACCTGGTATT
GTGATGGATT TGATTAGAAG GAAGCAAATC AACGTTAACG GAGTAAAGGT TTTTGTCTTA
GACGAAGCTG ATAACATGTT GGATGCTCAA GGATTAGGTG ATCAGTGTGT TCGTGTCAAG
AGAACATTGC CGAAGACGAC CCAATTGGTT TTGTTCTCTG CTACTTTCCC TACTAAAGTT
CGTCAGTACG CTGAAAAGTT TGTGCCCAAC GCCAATTCGT TAGAGTTAAA GCAAGAAGAG
TTAAATGTAG ACGGAATCAA GCAGTTGTAC ATGGACTGTG ACTCGGAAAA GCACAAGTTC
GAAGTTTTGT GTGAGTTGTA TGGTTTGTTA ACTATTGGTT CTTCTATCAT TTTTGTAGAG
AGAAAAGATA CTGCCAACTT GTTGTATGCC AAGATGAAAG CTGAGGGTCA TGCTTGTTCC
ATTTTACATG GTGGTTTAGA GACTAGCGAA AGAGATAGGT TGATCGATGA TTTCCGTGAA
GGAAGATCCA AGGTTTTGAT AACAACCAAC GTCTTAGCCA GAGGAATAGA TATCGCTTCT
GTTTCCATGG TGGTTAACTA TGACTTGCCC ACCGACAAGG ACGGCAACGC TGATCCATCC
ACTTATTTGC ATAGAATTGG TAGAACTGGT AGATTTGGTA GAGTCGGTGT TTCCATTTCC
TTCATATACG ACAAGAGATC ATACGAGATC TTGATGAAGA TCAAAGACTA CTTCGGCAAT
GTGGAAATGA CCAGAGTCCC TACCGATGAT TGGGATGAAG TTGAAAAGAT TGTCAAGAAG
GTTATCAAGA GCTGA
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| Protein sequence | MSAEKRVEAD AAELLSSLSL GESPAEKKDE KTEEVKKEEA KSEELNKVVE KTEEKVKEAN
AEDAKPEELK EVGKEENEEP KTNLIQSTYE VKVKLADIQA DPNSPLFSVK SFEELGLTPE
LLKGLYAMKF NKPSKIQEKA LPLLISNPPR NMIGQSQSGT GKTAAFSLTM LSRVDPKVPL
TQCLCLAPTR ELARQTLEVI STMGKFTNIT TQLIVPDALP RGLSTNAHII VGTPGIVMDL
IRRKQINVNG VKVFVLDEAD NMLDAQGLGD QCVRVKRTLP KTTQLVLFSA TFPTKVRQYA
EKFVPNANSL ELKQEELNVD GIKQLYMDCD SEKHKFEVLC ELYGLLTIGS SIIFVERKDT
ANLLYAKMKA EGHACSILHG GLETSERDRL IDDFREGRSK VLITTNVLAR GIDIASVSMV
VNYDLPTDKD GNADPSTYLH RIGRTGRFGR VGVSISFIYD KRSYEILMKI KDYFGNVEMT
RVPTDDWDEV EKIVKKVIKS
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