| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_53294 |
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| Symbol | |
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| ID | 4851904 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 3145676 |
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| End bp | 3149065 |
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| Gene Length | 3390 bp |
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| Protein Length | 1117 aa |
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| Translation table | |
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| GC content | 41% |
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| IMG OID | 640393612 |
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| Product | Hypothetical WD-40 repeat protein |
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| Protein accession | XP_001386930 |
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| Protein GI | 126275972 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2319] FOG: WD40 repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.149122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCAT TAGCACCCAA AACGTTTTCC ACGCCTACGA AGAAAGGATT CTCGTATGTG
TTGGGCCACT CTTCTCATAA CGAAAACCAT ATTCTTCCCA TCAATGCCAC ACAATACTCC
CTGGCTTCCC AGCAGTTGTA CACAGCCGGC CGAGATGGCA CTATCAAGGT ATGGAGTCAC
CAAGAACACT TAAACCCGTT TTCAGACGGG ATAAGTCAAC AAAACAACGA GCAGAGTGAT
ATCGCTGGTG TTGAGTTCTA TGAACCAGCC AGTAACGGCG AGGAGTATCC AGATATCGAT
GAGAAGATCT TGAAGTTGGA AACTTCTATA TCGTCCAATC CATTGCCCTA TAGCTACAGC
AGGCAGCGCA ATCGAAATAG TCATGTAGAA AGTGTATCCG AATATTCGAT AGTGCGCAAC
CATAATATCC ATTTCGATTG GATCAATGAT ATGAAGTTGA TCAACAACGA CCGGGATTTG
GTTTCATGCT CATCTGATCT CTCGATCAAG TTGTTGAACC TCAATGTTGA TGATAACTCG
ATAACGACGA CTACAAACAA CTTCAATACA AATAATAGCG AGGTCCATCG CTTCCCCAAC
ATGCATACAG ACTACATCAA GAAACTCTCT TACAACAAAA ATACCAACCA CTTGTTCAGT
GGAGGGCTTG ATGGTGACAT TATTGCCTGG GACTTGTTGA CGCTCAAGCC TTTTCTTCTG
GTGCCTAATC GGTCTTCGTC TATGGAACCA ACGGCTTCCA TATACTCTCT AGCCAATAGT
GAGAACTTGA TCTCTACTGG TGGACCCAAT AACACCATAA ATATATATGA TCGAAGAAGC
CAGAACCCGT TCATAAGAAA GTTGATCGGA CATCAGGACA ATATCCGATG TTTGCTAATG
AACGAGCGGT TCATTTTGAG TGGCTCCTCT GACACTTCCA TCAAGCTCTG GGACTTGCGG
AATTTCAAAG TTTACAAAAA CTTTGATATC CATGACTACC CTGTATGGTC TTTGTCAAGC
GAAGACAACA ACTTTGCTAA GTTCTATTCT GGGGACAAGG GAGGAAACAT CATAAAGACA
GACTTATCTT TTCTTTCTCA CTCTGTTCCT GAAGAGGACC AGTTTCACGG CTTTGAGACG
TTTAATTCAA ACGATAATCT TGTTATAGAC GAGAAGTTAG GTATATCGAC CATCGTTGCC
AAAGATTCAT CTCCAATCTT ATCTTTATGT TGGGAATCTA ACGAGGATAC GTTGTTTGCT
TCGAACTATG AGTCTTTGAA TCGGTTCTAC AACCCAGATA CAAACCAATT ATCCAAGTAT
CAGTATTTGA GGACTTGTTT AGACTATTCC ATCAACAAGG AAAATCAGCT CAATGACGAC
CTAGCTTCAG GTCTAGCTCC CGAAGACGCC ACTGTTCCAG GACAGAACGA TCAAACAGAT
TTGAATTCCG ACTTTTACGA CCTCATATCT CATCTCTCTA TGGATACCAA TGTCAACACT
TTTGATATTC AATCGACTTT TTCAGCACAT CAACATGCTA TGTTTGAGTC AGGAACTCCA
CCAACAGACA TGTATATGGA AAGTGATAAA TCAGCAGAAA ACGACGACGA GGGAGAATAC
AACTCGATGT TCTTGAACGT GAATGGTGGT CCATCACAAG AGTTTATCAA TGCATTCAAA
GACGAGTACG AATCTCAGGA AGCAAATCCT CTTTATCAAG AGCCCATTAA ACCTGTAGAA
AATCTGCAAA GCAAATTTAT AGACAACACT CCAGTTGAGA TCTTGTTGAA TCCGATTCCT
GCAGATCAGA TAACGTTGAT TCCATTTAAC AGACAGCCCA TTAGTGATTA CAAGATATCT
GCTAAAAGTA TCATTTCTAA GAGATCGTTT AATAACAAGC TTCAGCTCTT GGTTTTGTAC
CTCAATGGTG ATATCAAGAT ATGGGACATT ATCTTGTGCA AGGAGCTTCA AACATTCACA
TACGACAAAT CCAAGTTGTC GATGGTTAAC AGCAAAGATT TGGACCAACG ACTCAAAGAA
ATGGATGCTA TCTTCCGGAA ATTTCAGACT TCTGATACTT TGAACAATTG GTGTGAAGTT
GAAATTCGAG CTGGTAAGCT ATTGGTTACT GTGAAAGAAT CTTCGTACAT GAATGTAGAA
GTTTACTACG ACGATTTGAT CAAGAATTAC CCATTCTTAG ATATTGACCA CCCAGAGAAC
AGCATGTTAC CTAGAAATAG AATCAAGGTG ACAGACGATG ATCGGTTCCA TATTGGTGCC
GTATTACTTA ATTCAATTTT CCGCAACTAC GCTTTGTATG AATGGGAGTT TGATTGCAAA
GTGAGAGAAG AAATGAGATC TTTGCGGAAA AGTAATAGAA CATTGAGTAA TACTCCCCAG
GAGGACGACA GCGATAGTAA TTCTATCTCA AGTAGTATTA GGAAACTCAA GAAGTTTAGC
AAAAAGTCCT CAAGGACTAA TTTGACTAAT TTGGCTCAAC TGAGTGGTAG CCCAGCTAGT
TCAGCACAGA ACAGTGTTCG TGAAATGAGC ATTCTGGAAA CTCCTTTAAC TGAGTTCTTG
AACTTCAGCG ACGATTCTCC TGCTGCTGTT TCGTCTTCTT CAAACGTCAA CTACGATAAC
TCAATCATGA AATTGTTACA AACTAATAAG AGAATCTACT GGGATAAATA CAATAATTCT
TCATATATTG TCGGTAAAGG AAAGTCGGTT CCGTCCATTT TGCATGTGGA TTCTATCCAT
CCTTCATTGG ACGAGAACCA GACCCCTGAT ATACCATACA TGCCTATTGT TAACAACAAG
AGGTTGCCAC AAGATTTGTT GATTATCATC TTCGAGTATT CTCCAGATCT TGGTAACTAT
CGTGATGTGT GTAGCTTCAC ATTGGAAGAT ATACAGAAGA TTGACATCAA AGCGAACGAA
AAGTCCAATT TGGTGGATGA GTTAAGAATG CAGTTGCCTC GTTGGATTGG ACATCCTATT
CTCTTCAACA GGTTCCCCCA AAAGGAACAC CCTAAGATAG CTTTCCAGCT ATTTGAAGTG
GACTACACCA GTCTACCAGC AAATAAGAAG ATAGGGGGCA AGGCACAGAA AAAGATCAAG
AAATTGCCTG TCCTCGAGAG TCTGATCAAG TTGACGTCGC ATAACATGCT CAGAGTGAGT
AAAGTTTTGT CTTTCTTGAC CGAAAAATTT GATTCCAAGA CGTCAGAAAT GAAAGACAAG
AAGAGCTTGC CTACAGACTG GTTAGCTCTT GAGTGTAGAG GTGAGGAGTT GCCTTCAGAT
ATGACATTAC AGACGATTAA AACGACGATC TGGAAGAGTA GTTCCGATAT TGAGTTGAGG
TTTAGAAGGA AGTTTGATGT TGAAAAGTAG
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| Protein sequence | MPSLAPKTFS TPTKKGFSYV LGHSSHNENH ILPINATQYS LASQQLYTAG RDGTIKVWSH
QEHLNPFSDG ISQQNNEQSD IAGVEFYEPA SNGEEYPDID EKILKLETSI SSNPLPYSYS
RQRNRNSHVE SVSEYSIVRN HNIHFDWIND MKLINNDRDL VSCSSDLSIK LLNLNVDDNS
ITTTTNNFNT NNSEVHRFPN MHTDYIKKLS YNKNTNHLFS GGLDGDIIAW DLLTLKPFLL
VPNRSSSMEP TASIYSLANS ENLISTGGPN NTINIYDRRS QNPFIRKLIG HQDNIRCLLM
NERFILSGSS DTSIKLWDLR NFKVYKNFDI HDYPVWSLSS EDNNFAKFYS GDKGGNIIKT
DLSFLSHSVP EEDQFHGFET FNSNDNLVID EKLGISTIVA KDSSPILSLC WESNEDTLFA
SNYESLNRFY NPDTNQLSKY QYLRTCLDYS INKENQLNDD LASGLAPEDA TVPGQNDQTD
LNSDFYDLIS HLSMDTNVNT FDIQSTFSAH QHAMFDDKSA ENDDEGEYNS MFLNVNGGPS
QEFINAFKDE YESQEANPLY QEPIKPVENL QSKFIDNTPV EILLNPIPAD QITLIPFNRQ
PISDYKISAK SIISKRSFNN KLQLLVLYLN GDIKIWDIIL CKELQTFTYD KSKLSMVNSK
DLDQRLKEMD AIFRKFQTSD TLNNWCEVEI RAGKLLVTVK ESSYMNVEVY YDDLIKNYPF
LDIDHPENSM LPRNRIKVTD DDRFHIGAVL LNSIFRNYAL YEWEFDCKVR EEMRSLRKSN
RTLSNTPQED DSDSNSISSS IRKLKKFSKK SSRTNLTNLA QLSGSPASSA QNSVREMSIL
ETPLTEFLNF SDDSPAAVSS SSNVNYDNSI MKLLQTNKRI YWDKYNNSSY IVGKGKSVPS
ILHVDSIHPS LDENQTPDIP YMPIVNNKRL PQDLLIIIFE YSPDLGNYRD VCSFTLEDIQ
KIDIKANEKS NLVDELRMQL PRWIGHPILF NRFPQKEHPK IAFQLFEVDY TSLPANKKIG
GKAQKKIKKL PVLESLIKLT SHNMLRVSKV LSFLTEKFDS KTSEMKDKKS LPTDWLALEC
RGEELPSDMT LQTIKTTIWK SSSDIELRFR RKFDVEK
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