| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_53101 |
|---|
| Symbol | MDR17 |
|---|
| ID | 4851827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 2929973 |
|---|
| End bp | 2931634 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | |
|---|
| GC content | 42% |
|---|
| IMG OID | 640393535 |
|---|
| Product | multidrug resistance protein 7 |
|---|
| Protein accession | XP_001386894 |
|---|
| Protein GI | 126275721 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATTACA GATTTGTTAG AGACAGTTTT TGGGGCAGAC TTGCCTACCA CTTGTCGGGC
CACAAGGTGT GGACTCATCC AGAAGAGCAA CCAGACTACG TGATACCTGA AAAATATACA
GAAGAATACA AAGCGCAAAT GTTTGATAAG GAACTGGTGG ATATAGTACC TGAAGGTGAC
GCTGAGTCCC TATCCGAATC CTCAAGTACG AGTGAAACCT TGGGAGTAAA TAGCTCAAAA
ATTGTTGTTG ATTGGGACGG TGAAGATGAT CCAGAAAATC CTTTCAATTG GCCATTAGCA
CAAAAGATCT TCTTCATTGG TGAAATCGTT TTTTTGACTA CTTCAGTGTA TATGGGTTCT
GCCATTTACA CTCCTGGTGT CGATCAAATC ATGGAAGAGT TCAACATTAG TCAGACAATA
GCGACCTTGC CTTTAGCCTT GTTTGTTATC GGTTACGGTT TGGGTCCCAT GGTCTTCTCA
CCACTTTCGG AAAACGCTAT TTTTGGAAGA ACCTACATCT ACATCATAAC TTTGTTCATT
TTTTTCATCT TGCAAATTCC TACGGCATTA TCCAGAGACA TTGCTTCATT GTGTGTATTG
AGATTTTTGA GTGGATTGTT TGCTTCGCCA TGTTTAGCAA CTGGTGGTGC TTCCGTTTGT
GATGTCATTA GAAAGCCATA TGTTCCTGTG GGCCTTGCTT CTTGGTCTCT TGGAGCTGTC
TGTGGTCCTT CTCTTGGTCC ATTGATTGGT TCCGTCTTGA CTGTTAAGGG TGGATGGAGA
TGGACTTTCT GGTTCATGGC CATCATTTCG GGTTCATCGT TCTTAGTCTT GAGTTTCTTC
TTACCAGAAA CCTACGGAAA GACTTTACTT TATAGAAAGG CTAAAAGATT AAGAGCTCTC
ACTGGGAACG AAAACATAAC AAGTGAAGGT GAAATTGAGA ACAGTAAGTT GTCCTTCTCT
GAGTTGGCTT TGGACACTTT GTGGAGACCA ATCGAAATTT CTATCCTTGA ACCAGTTGTC
TTGTTGATCA ATATCTACAT TGCATTGGTG TATTCCATCT TGTACCTTTG GTTCGAAGCT
TATCCAATTG TATTTTTCCA AACCAAGCAC TTCACCTTGG TCGAATTGGG TGTTTCATAC
GTCAGTATCA TGATTGGTAT TTGGATTGCC TGTGCCATCT ACATTCCAAT CGTCAGAAAA
ATCTTTACGA AGAAAATTCT CAACGACGAA GACGTTGCAC CAGAAGTGTT TATCCCTATG
GCCATTGCTG GAGGTGTGTG CATGCCAGTC GGTGTCTTTA TCTTCGGATG GACATCGTCT
GCCGACATTC ACTGGATTGG TCCAATTATC GGTGGTGCTA TCTTCGCTGC CGGTGCCTTC
TTAATTTTCC AAACGTTATT CAACTACTTG AGTAACTCTT TCTCGAGATT CTTGGCTTCT
GTCTTTGCTG GAAACACTCT TTTCCGTTCA GTGATTGCCG GTTGTTTCCC ATTGTTCGGA
CATGCTTTGT TCACTAACTT GGAAACCAAG AAGTTTCCAG TTGCTTGGGG CTCTACTATC
TTGGGTTGTA TCACTGCGTT GATGATCTTA ATTCCAGTTT TGTTCTATTT GAACGGTCCA
AAGTTGAGAG CCAGATCTAA GTACGCTGGT GATGGCAAAT AA
|
|---|
| Protein sequence | MHYRFVRDSF WGRLAYHLSG HKVWTHPEEQ PDYVIPEKYT EEYKAQMFDK ELVDIVPEGD
ADTSETLGVN SSKIVVDWDG EDDPENPFNW PLAQKIFFIG EIVFLTTSVY MGSAIYTPGV
DQIMEEFNIS QTIATLPLAL FVIGYGLGPM VFSPLSENAI FGRTYIYIIT LFIFFILQIP
TALSRDIASL CVLRFLSGLF ASPCLATGGA SVCDVIRKPY VPVGLASWSL GAVCGPSLGP
LIGSVLTVKG GWRWTFWFMA IISGSSFLVL SFFLPETYGK TLLYRKAKRL RALTGNENIT
SEGEIENSKL SFSELALDTL WRPIEISILE PVVLLINIYI ALVYSILYLW FEAYPIVFFQ
TKHFTLVELG VSYVSIMIGI WIACAIYIPI VRKIFTKKIL NDEDVAPEVF IPMAIAGGVC
MPVGVFIFGW TSSADIHWIG PIIGGAIFAA GAFLIFQTLF NYLSNSFSRF LASVFAGNTL
FRSVIAGCFP LFGHALFTNL ETKKFPVAWG STILGCITAL MILIPVLFYL NGPKLRARSK
YAGDGK
|
|---|
| |